Plant FIBer expression Database

Pt-KU80.1 (Potri.014G069700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-KU80.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48050 828 / 0 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G148200
[exp]
771 / 0 AT1G48050 632 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009294
[exp]
891 / 0 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Lus10015868
[exp]
872 / 0 AT1G48050 826 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0616 SPOC PF02735 Ku Ku70/Ku80 beta-barrel domain
CL0616 PF03730 Ku_C Ku70/Ku80 C-terminal arm
CL0128 vWA-like PF03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain
CL0128 PF08785 Ku_PK_bind Ku C terminal domain like
Representative CDS sequence
>Potri.014G069700.2 pacid=42763496 polypeptide=Potri.014G069700.2.p locus=Potri.014G069700 ID=Potri.014G069700.2.v4.1 annot-version=v4.1
ATGGCTCGAAACAAGGAAGGATTGGTGCTGTTACTCGATGTCGGTCCAACAATGTACAGTGTTCTTCCTGAAATTAAAAAAGTTTGCTCCATGCTTATTC
AGAAAAAGTTGATTTATGGAAAATTCGATGAGGTTGGAGTTGTTGTTTTCGGGACTCAAGAGACTGACAATGAGCTGACGAAAGAAGTAGGTGGGTACGA
GCATGTTGTCGTCTTACGAAATATCAAAGTTGTTGATGGAGATCTTGTTGATGCATTTCAAGAGCTCCCTCGAGGAAACTTTGATGGAGATTATCTTGAT
GCTATTGTTGTTGGAATGGATATGCTGATAAAGAAGTATCAAGCAACAAACAAAGGAAAAAAGCGTCTGTGTCTTATTACAAATGCACTGTGCCCTATTA
AAGATTCATGTGAAGGGACCAAGGAAGATCAAGTGAACACTATCGCGGCTCAAATGAGTGCACATGGAATGAAAATGGAAAGTGTTATTGTGAGGGGAAG
ATTATGCGGGGGTGGAGACCAGAGAATAATGGCTGAAAATGATCGACTGCTGAATCTTTTTTCAGAGAAAACATCTGCCAGGGCAGTGTATGTTGAGAGT
CCAACTGCATTGTTAGGTGCAGTTAAAACTCGAAATATATCTCCAGTAACAATATTCAGAGGTGATCTTGAACTTGGGTCCAAGATGAAGATTAAGGTGT
GGGTCTACAAAAAAACCTCAGAGGAGAAATTTCCCACTCTGAAGAAATATTCTGATAAAGCGCCTCCAACTGACAGATTTGCGACGCATGAAGTCAAAGT
AGATTATGAGTACAAAAGTGTGGAAGATCCTAATAAGGTTGTTCCTCCAGAACAAAGAATTAAGGGTTACAGATATGGACCACAAGTTGTTCCAATATCA
TCTGCTGAGTGGGATGCTGTCAAATTCAAACCAGAAAAAAGCGTGAAGCTTCTAGGATTTACTGATGCTTCAAACATAATGCGGCACTACTACATGAAAG
ATGTCAACGTCTTTATTCCTGAACCAGGCAATGCAAGGGCTGCTCTTGCAGTTTCTGCTTTAGCTAGAGCAATGAAGGAAATGAATAAGGTTGCAATTTT
GCGATGTGTCTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGGGTTCTGACACCCAACATATCTGAGAAAGACAGCACTCCTGATTCATTTTACTTCAAT
GTACTTCCTTTTGCCGAGGATGTCCGGGAATTTCAATTTCCATCTTTCAGCAGTTTTCCAGCTTCATGGCAGCCGAATGAGCAGCAGCAAGAGGCCGCAG
ATAACCTTGTAAAGATGCTTGACCTTGCACCATCTGCCAAACAGGAAGCTCTACTGCCTGATTTCACACCAAATCCTGTTCTGGAGCGGTTTTATCGTCA
TCTTGAATTAAAGTCAAAGCATCCAGATGCAGCTGTGCCTCCACTGGATGAAACTCTCAAAACAATAACTGAAGCTGATCCAGATCTTCTTTCTGAAAAG
AAAAATGTAATGGATGCATTTTATAAGAGCTTTGAACTCAAGGAGAATCCAAGGCTAAAGAAATCAAGCAAGCGGTTATTGGAGAAAAAACCCTCTGGTT
CTGATGAGGATTATCAAGATACAACCAATGCTCTAGTTGTCAAGCCTGTTAAGGTTGAAAAAATTGGGGATTCAAGTCCAGTTCAAGATTTTGAAGCGAT
GATGTCATGCAGAGATAGTCCAGATTGGGTTAGTAAAGCAATTCAGGATATGAAAAATAAAATATATAGCCTGGTTGAGAATTCCTATGATGGGGATAAT
CATGGTAAAGCAATGGAATGTCTACTTGCCCTTCGCAAAGGTTGCATCCTTGAGCAAGAACCTAAACAGTTCAATGATTTCCTTCACCATCTTTTCAATG
TCCGCCAAGAGAAAAAGTTTCGCAATTTCTGTGAATCCCTCATACCCAAAGGACTCACTTTGATTTCAAAGTCAGAAGCCATAGACAGTGAGGTTACAGA
TGATGAAGCTAGAAACTTTCTGGTTAAAAAAGAGCTGAAATTTGAGTGA
AA sequence
>Potri.014G069700.2 pacid=42763496 polypeptide=Potri.014G069700.2.p locus=Potri.014G069700 ID=Potri.014G069700.2.v4.1 annot-version=v4.1
MARNKEGLVLLLDVGPTMYSVLPEIKKVCSMLIQKKLIYGKFDEVGVVVFGTQETDNELTKEVGGYEHVVVLRNIKVVDGDLVDAFQELPRGNFDGDYLD
AIVVGMDMLIKKYQATNKGKKRLCLITNALCPIKDSCEGTKEDQVNTIAAQMSAHGMKMESVIVRGRLCGGGDQRIMAENDRLLNLFSEKTSARAVYVES
PTALLGAVKTRNISPVTIFRGDLELGSKMKIKVWVYKKTSEEKFPTLKKYSDKAPPTDRFATHEVKVDYEYKSVEDPNKVVPPEQRIKGYRYGPQVVPIS
SAEWDAVKFKPEKSVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKEMNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFN
VLPFAEDVREFQFPSFSSFPASWQPNEQQQEAADNLVKMLDLAPSAKQEALLPDFTPNPVLERFYRHLELKSKHPDAAVPPLDETLKTITEADPDLLSEK
KNVMDAFYKSFELKENPRLKKSSKRLLEKKPSGSDEDYQDTTNALVVKPVKVEKIGDSSPVQDFEAMMSCRDSPDWVSKAIQDMKNKIYSLVENSYDGDN
HGKAMECLLALRKGCILEQEPKQFNDFLHHLFNVRQEKKFRNFCESLIPKGLTLISKSEAIDSEVTDDEARNFLVKKELKFE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48050 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMO... Potri.014G069700
[exp]
0 1 Pt-KU80.1
Potri.003G012451
[exp]
10.58 0.7801
AT1G04520 PDLP2 plasmodesmata-located protein ... Potri.002G257300
[exp]
19.44 0.7587
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
26.11 0.7500
AT5G43990 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-dom... Potri.014G192500
[exp]
36.61 0.7536
AT1G60220 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-... Potri.010G040600
[exp]
36.81 0.7624
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Potri.007G059100
[exp]
39.49 0.7558
AT1G09730 Cysteine proteinases superfami... Potri.017G044000
[exp]
41.13 0.7591
AT1G73100 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)... Potri.003G188700
[exp]
48.08 0.7429 SDG906,SUVH3.3
AT2G44200 CBF1-interacting co-repressor ... Potri.016G000501
[exp]
59.89 0.7499
AT2G25580 Tetratricopeptide repeat (TPR)... Potri.014G116600
[exp]
61.60 0.7471

Potri.014G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.