Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60850 843 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004021 [exp] 817 / 0 AT3G60850 739 / 0.0 unknown protein Lus10030268 [exp] 813 / 0 AT3G60850 739 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G070200.1 pacid=42762794 polypeptide=Potri.014G070202.1.p locus=Potri.014G070200 ID=Potri.014G070200.1.v4.1 annot-version=v4.1 ATGAATCCTCCTCACAAAACGGAAACTGATCTCTTCCATAACCACCATGACCTGGTCCCGCCACTCCCTCCTCCTCCTCACCAGATCATCATCCCAACTC CTCAAACCCAATCACAACCGTCCATTCAAGACGACCTTTCCCTCCCCGAAATCGTCCTCTTCTGTTCCCCTTCCTCCCCCGATAACTCACCGAGTCAATC CTCCTCCGACAACGACGACTCACTCAGTCACCACCAAAACAACCTCCACCACAATTCCAATCGTATCCTCAACCCTCACGCGCCTGCCTTTATTAACCCT GAGCCACACATATCCACACAGTTCTACACGTTCAACGCTGAATCTCACACTCTTATGATCCGTTGCATACTCGAGCAGCGCCTGGCCACTCCCGACGAGA TCCGGGCGGCGACGCCGTGCACGGTGTTGAAATCGTGGCGGAATGTCTGGAAAGATAGGAACGAAGACACCGCTTACCTAACGGGATGGAAAAGGATTCA GGAGAAGTTAATGGCGCATGTGGACTCTACATCTGGTAACGAATTTCTCTGTTTTAAAAATAATTCACAGCAATTTGTTTCTCATATTGATCAATGGCAA GATATAGTTACTAGTTTCCACGGCGACGCCGATTTAAAACATTTAGGGTTAAGAGAAACAATAGAGAGAATTAAACAAGTTTGGACTGTAGGTGCTAAGT TTTATGGAATACCGGAGAGTTTTATTAGGGTTTGTGTTGCTGCCTGTCCGGTTTGTTCCACGAGCGAGGGTTCTAATTCGCGGAATAAACGTAGGCGTTT TGAGTACACGGAGTCATTTGATGTGCCTGCGAAGGAAGTTCCAACGAAGTTACAGCAATTAGCAGCAAAACATAAGGTTGTGCTTTGTATTAGGCAGAAA TATATTAGGTATAAACCGTTTATGGCAGAGGTTAAGGATTATGCCTGCCATAGGGCGGGGGAGCCAGTTGCAAAGAAGTCAAGGATGTTGAAAAGAGAGC CTTATGCGTCAAAGAGGTGTGGGTGTGGGTTTAGGATTAGGGCGATTGTTCCGATTACGAATTATAATGAGAAGGATAAGACGTTTGTGTATCAAGAAGA GGGGATGGCAATGTTTAAGTTGTATGCAGTGCATTCAGGGCATGAACCGGGGCCATTGGATGGGAATGCGAGGATAATACATCGGGTTGTTGGGCATAAA GGTGGGTTTATGATGGATCAAGAAATGGTTTATGGGGTGCGCGAGGATGTGGATAGTGAAGGTTTTGGTTTGTTGGGGAAGGATGATGGGGAATTTCGAC TTTCAGTTTTGCAGCAGGTGCAAGAGTTGAGAGCTGAAATTGGGTTATTAGAAGGGAGATTGAGGAAAATCCCGAGTGAATTGTTGGGTTCGGTGGCTCA GGAATTGTATGATGTTGTCAACAAAGTTAGGAGCATAGGGGATGAGAGTTCAAAGACAATAGGGTTGCTTTCGCACAAGTCTCATTCAGATGATGTGTTA GTGGGGGGAAATGATCTGGCTCACTGGACTGATCACCATGAACGGCTATATGGGAATGGCAAGGAGGCAGAATTGATCGAAGATGATGAAGATAGTTTTG GCCGGACACTTGGGGATGTTGTTCCCTGGGACCAGATGAGGGCAGAGTGTAGGAGTGAGAAGGACCTGTTGAGTGAGCCGTCTAAGCCTGAAAAGTGGTT GAAGTGCAGTGATTTTGATGAGAAGAGCATTCTTGACTGTGAAGATACTAAACTAACCAAGCCCATGAGACATGATGAGGGTATAGTGACAGATGTAGGT CTTATACAGGTTGATAGTTTCTACCATGAGAATGCTAAATGGTATGATTCACCTTGTGGGTTGGACACCAGTGCAGATTGTGAGGACAGTGAATTCAGAC ATGGGGAAATTGTGTAG
AA sequence Show only first row Show all	>Potri.014G070200.1 pacid=42762794 polypeptide=Potri.014G070202.1.p locus=Potri.014G070200 ID=Potri.014G070200.1.v4.1 annot-version=v4.1 MNPPHKTETDLFHNHHDLVPPLPPPPHQIIIPTPQTQSQPSIQDDLSLPEIVLFCSPSSPDNSPSQSSSDNDDSLSHHQNNLHHNSNRILNPHAPAFINP EPHISTQFYTFNAESHTLMIRCILEQRLATPDEIRAATPCTVLKSWRNVWKDRNEDTAYLTGWKRIQEKLMAHVDSTSGNEFLCFKNNSQQFVSHIDQWQ DIVTSFHGDADLKHLGLRETIERIKQVWTVGAKFYGIPESFIRVCVAACPVCSTSEGSNSRNKRRRFEYTESFDVPAKEVPTKLQQLAAKHKVVLCIRQK YIRYKPFMAEVKDYACHRAGEPVAKKSRMLKREPYASKRCGCGFRIRAIVPITNYNEKDKTFVYQEEGMAMFKLYAVHSGHEPGPLDGNARIIHRVVGHK GGFMMDQEMVYGVREDVDSEGFGLLGKDDGEFRLSVLQQVQELRAEIGLLEGRLRKIPSELLGSVAQELYDVVNKVRSIGDESSKTIGLLSHKSHSDDVL VGGNDLAHWTDHHERLYGNGKEAELIEDDEDSFGRTLGDVVPWDQMRAECRSEKDLLSEPSKPEKWLKCSDFDEKSILDCEDTKLTKPMRHDEGIVTDVG LIQVDSFYHENAKWYDSPCGLDTSADCEDSEFRHGEIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60850			unknown protein		Potri.014G070200 [exp]	0	1
AT1G31870			unknown protein		Potri.003G087200 [exp]	1.73	0.8777
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	2.00	0.8880
AT5G56210		WIP2	WPP domain interacting protein...		Potri.011G169000 [exp]	3.16	0.8706
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	3.46	0.8529
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	4.69	0.8450
AT5G62030			diphthamide synthesis DPH2 fam...		Potri.019G041300 [exp]	6.63	0.8714
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	7.14	0.8486
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	7.93	0.8652
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.001G261700 [exp]	8.48	0.8275
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	8.48	0.8598

Compare expression of checked genes

Potri.014G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.