Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01970 468 / 1e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19520 241 / 1e-72 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G50280 87 / 5e-18 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 86 / 6e-18 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09820 83 / 6e-17 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G59040 83 / 7e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62930 79 / 1e-15 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09680 77 / 6e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 77 / 6e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 77 / 8e-15 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228200 [exp] 232 / 3e-69 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.002G034900 [exp] 151 / 2e-41 AT1G19520 296 / 2e-93 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.012G123600 [exp] 92 / 4e-20 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G276500 [exp] 92 / 1e-19 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G008900 [exp] 89 / 8e-19 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G017400 [exp] 87 / 6e-18 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G091800 [exp] 85 / 1e-17 AT5G50280 845 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G037200 [exp] 84 / 3e-17 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 82 / 1e-16 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009299 [exp] 436 / 6e-153 AT1G01970 430 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030026 [exp] 201 / 5e-58 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035298 [exp] 190 / 6e-54 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10015865 [exp] 107 / 2e-28 AT1G01970 103 / 7e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015864 [exp] 107 / 5e-28 AT1G01970 110 / 9e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005058 [exp] 91 / 2e-19 AT3G59040 623 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027829 [exp] 89 / 8e-19 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017134 [exp] 87 / 3e-18 AT2G35130 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018019 [exp] 87 / 4e-18 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018318 [exp] 83 / 8e-17 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.014G070500.1 pacid=42763664 polypeptide=Potri.014G070500.1.p locus=Potri.014G070500 ID=Potri.014G070500.1.v4.1 annot-version=v4.1 ATGGCCACTTATGTTATTAACATTCTCCCGTTTTCATCTCCAACTTGCCCACTACACTCCGAACCCAAAAAAACCAGTAACCTTCACTTTCTGGGCAACT CATTATGTCAACAACCTGTGACTTTAACTTCTTGCAAGTCCCAAATTCAGCCTGTATTAGCTGCTATCAATGTAGAAGAGAAAGTGGAAGGAGAAATAGG AAAAGAGAAACCTAAGTTTAGGTGGGTCGAGATAGGTCCTAATATACCAGAAGAACAAAAACAGGCCATATCTCAACTGCCATTTAAGATGACCAAAAGA TGTAAAGCGCTTATGAGACAGATAATTTGTTTCAATGACAAGAAAGGTAGTTTGCGTGGTTTGTTGAGTGCTTGGGTTAAGATTATGAAGCCAAGGAGAA AAGATTGGCTTTCTATTCTCAAGGAATTGAACAAGATGGAACATCCACTTTATCTTGAGGTGGTAGAAATTGCCCTTCTAGAAGAATCTTTTGAGGCTAA TGTTCGTGACTATACCAAAATAATTCATTTTTATGGGATGAACAACCAGCTTGAAGAAGCTGAAAGAACTCGCTTAGCCATGGAGGAGAGAGGGTTTGTA AGTGATCAGGTAACGTTAACTGCTATGATTCACATGTACAGCAAAGGTGGCAATCTTACTCTTGCTGAAGAAACTTTTGAAGAGCTAAAGCTTCTTGGTC AACCATTAGATAGGAGATCATATGGCTCGATGATCATGGCCTATATCAGAGCTGGAATGCCTGAAAAGGGGGAGATGATACTTAGAGAAATGGACGCTCA AGAAATTCGTGCTGGAAGTGAAGTTTACAAGGCACTGTTAAGAGCGTACTCCATTATTGGTGATGCTGATGGAGCTCAAAGAGTGTTCGATGCAATTCAG CTTGCGGGTATTCCTCCTGATGATAGAACGTGTGCAGTCCTCTTAAATGCTTATGGAATGGCAGGTCAAAGTCAAAATGCATACGCTACATTCGAAAATA TGTGGAGGGCTGGCATTGAACCTACTGATAGATGTGTAGCTCTGGTGTTGGCTGCATATGAAAAGGAGAACAAGCTCAACCAGGCCTTGGACTTTCTAAT AGGTTTGGAGAGAGAGAAACTCATCATTGGCAAAGAAGCATCAGAAGTACTAGCTGAGTGGTTCGGAAGACTCGGGGTCGTGAAAGAGGTGGAGCTTGTC TTGAGAGAATATGCTGCGGGGTAA
AA sequence Show only first row Show all	>Potri.014G070500.1 pacid=42763664 polypeptide=Potri.014G070500.1.p locus=Potri.014G070500 ID=Potri.014G070500.1.v4.1 annot-version=v4.1 MATYVINILPFSSPTCPLHSEPKKTSNLHFLGNSLCQQPVTLTSCKSQIQPVLAAINVEEKVEGEIGKEKPKFRWVEIGPNIPEEQKQAISQLPFKMTKR CKALMRQIICFNDKKGSLRGLLSAWVKIMKPRRKDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIHFYGMNNQLEEAERTRLAMEERGFV SDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPLDRRSYGSMIMAYIRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVFDAIQ LAGIPPDDRTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKENKLNQALDFLIGLEREKLIIGKEASEVLAEWFGRLGVVKEVELV LREYAAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01970			Tetratricopeptide repeat (TPR)...		Potri.014G070500 [exp]	0	1
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	3.00	0.9642
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.016G036200 [exp]	3.46	0.9582
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	12.64	0.9556
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	12.72	0.9238
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	14.14	0.9392
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	15.58	0.9483
AT1G45230			Protein of unknown function (D...		Potri.014G028300 [exp]	17.94	0.9497
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	22.27	0.9490
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	23.55	0.9540
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	24.73	0.9531

Compare expression of checked genes

Potri.014G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.