Potri.014G070600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60860 2664 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT1G01960 2560 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1)
AT4G38200 1588 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT4G35380 1545 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT3G43300 902 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
AT1G13980 337 / 3e-94 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
AT5G39500 320 / 1e-88 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1)
AT5G19610 238 / 3e-63 GNL2 GNOM-like 2 (.1)
AT5G27970 75 / 6e-13 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G149200 3214 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.004G208400 1709 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.009G169800 1692 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.006G216900 875 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Potri.017G078900 327 / 8e-91 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.017G078800 303 / 1e-83 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.018G075300 218 / 6e-57 AT5G19610 1796 / 0.0 GNOM-like 2 (.1)
Potri.013G035100 99 / 2e-20 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009300 3030 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10015863 2038 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009244 1773 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10022983 1668 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10001620 1588 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009803 856 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10038084 778 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10036789 338 / 9e-95 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10026627 328 / 2e-91 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10030432 325 / 2e-90 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01369 Sec7 Sec7 domain
PF12783 Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal
PF16213 DCB Dimerisation and cyclophilin-binding domain of Mon2
Representative CDS sequence
>Potri.014G070600.1 pacid=42763264 polypeptide=Potri.014G070600.1.p locus=Potri.014G070600 ID=Potri.014G070600.1.v4.1 annot-version=v4.1
ATGGCTTCCACGGAAGCCGATTCCCGGTTAAGCCAGGTAGTATCTCCTGCTTTAGAAAAAATCATCAAAAACGCATCGTGGCGTAAACACTCGAAATTAG
GACACGAATGCAAATCCGTCCTCGAAATTCTTACTTCACCAGAACCCCAAGAACAACCTCCTCCGACTTCCACTTCCGACGACTCCTCCCCCTCCGAATC
CTCTCTACCTGCCCCACTCCACGACGGCGGGTCCCACGAATACTCCCTTGCAGAATCCGAAACAATCCTCAGCCCTCTGATCAACGCGTGCAACACTCAA
TTCCTCAAGATCGTCGATCCAGCCGTTGATTGCATCCAGAAATTGATCGCCCATGGGTACATACGTGGAGAAGCGGATCCCACCGGAGGTGCAGAAGCGA
AATTGTTAGCTAAATTGATCGAATCTGTGTGTAAATGTTATGATTTAGGGGATGATGGTGTTGAATTGTTGGTTTTGAGAACCCTATTATCGGCTGTTAC
GTCTATTTCCTTAAGGATTCATGGAGATAGTTTGTTGCAAATAGTGAGGACTTGTTATGATATTTATCTAGGGAGTAAAAATGTGGTTAATCAAACAACG
GCGAAAGCATCGTTGATTCAAATGTTAGTTATTGTGTTTAGGAGAATGGAGGCTGATTCTTCGACAGTTCCGATTCAGCCGATTGTTGTGGCTGAATTAA
TGGAACCAATGGAGAAATCTGATGTGGATGGGTCAATGGCGGTGTTTGTTCAAGGTTTTATAACCAAAATTATGCAGGATATCGATGGGGTTTTAAATCC
GGGGACACCGAGCAAGGCTTCAATGATGGGGGCACATGATGGGGCTTTTGAGACTACGACTAGTACAGTGGAGAGTACAAATCCGGCTGATTTGCTTGAT
TCGACAGATAAGGATATGTTGGATGCGAAGTATTGGGAGATTAGTATGTACAAGACGGCTTTGGAGGGGAGGAAAGGGGAGTTGGCAGATGGGGAAGGGG
AAAGAGATGATGATTTGGAAGTTCAGATTGGGAATAAGTTGAGGAGAGATGCTTTTTTGGTGTTTCGAGCACTTTGCAAGTTGTCTATGAAAACACCACC
AAAAGAGGCTCTGACTGATCCTCAGTTGATGAGAGGGAAGATTGTCGCGTTGGAGTTATTGAAGATTTTGTTGGAGAATGCTGGTGCCGTGTTTAGGACT
AGTGACAGGTTCTTAGGTGCCATCAAGCAATATCTATGTCTTTCACTGTTGAAGAACAGCGCTTCGAGTCTAATGATCATTTTCCAGCTTTCTTGCTCCA
TTTTCATTAGTTTGGTTTCAAGATTTAGAGCTGGATTGAAAGCCGAGATTGGAGTATTTTTTCCTATGATTGTTCTAAGGGTTCTGGAAAATGTTGCTCA
ACCTAATTATCAGCAGAAGATTATAGTGCTTCGGTTTCTAGATAAGCTCTGTGTTGATTCACAGATCTTGGTAGACATTTTTATTAATTATGATTGTGAT
GTCAACTCATCTAACATATTTGAGAGAATGGTCAATGGACTCCTTAAAACTGCTCAAGGCGCCCCTCCTGGTACTGCTACTACACTTTTGCCACCTCAGG
AGGTGTCCATGAAACTTGAAGCTATGAAGTGCTTAGTGGGTATTCTGAAATCAATGGGAGACTGGATGAATAAACAATTGCGCATTCCCGATCCTCATTC
TACCAAGAAACCTGATGCAGCTGAGAACAGTCCTGAACCTGGAAGTCTTCCCATGGCAAATGGTAATGGGGATGAGCCTGTTGACGGATCGGATTCTCAT
TCTGAAACCTCCACTGAAGCATCAGATGTTTCAACTATTGAGCAACGAAGGGCTTACAAGCTGGAACTTCAGGAAGGTATATCTCTTTTTAATCGGAAGC
CTAAGAAAGGAATTGAGTTTCTAATCAATGCAAATAAAGTGGGCCATTCAGCAGAGGAGATAGCAGCCTTTCTTAAAAATGCATCGGGCTTGAACAAGAC
TCTGATTGGTGATTACCTTGGGGAAAGAGAAGATTTGTCACTGAAAGTGATGCATGCTTACGTGGATTCTTTTGACTTTCAAGACCTGGAGTTTGATGAG
GCTATCAGGGTCTTTCTACAGGGATTTAGGTTACCAGGTGAGGCACAGAAGATTGATCGAATTATGGAGAAGTTTGCTGAACGTTACTGCAAATGTAATC
CAAAAGTTTTTAGTAGTGCTGACACAGCCTATGTCCTCGCTTACTCTGTGATAATGCTCAATACTGATGCTCATAATCCCATGGTCAAAAGTAAGATGTC
AGCTGATGACTTCATTAGAAACAATCGTGGCATTGACGATGGGAAAGATCTACCTGAGGAGTTCTTGAGATCATTGTTTGAACGAATATCAAAAAGTGAG
ATCAAAATGAAAGAAGATAATTTGGATCTCCAACAAAAGCAGTCTTTGAATTCAAACAGAATTTTAGGCTTGGACAGTATCCTAAACATCGTGATCCGCA
AGCGGGGCGAAGAAAAGCATATGGAAACAAGTGATGATCTTATCAGGCACATGCAGGAACAATTTAAAGAAAAGGCTCGGAAATCTGAGTCAGTTTATTA
TGCTGCAACAGATGTGGTGATTCTTAGATTCATGGTTGAGGTATGCTGGGCTCCTATGTTGGCAGCCTTCAGTGTGCCTCTGGACCAAAGTGATGATGAA
GTGGTGATAGCTCTGTGTCTTGAAGGTATCCGGTGTGCTATTCATGTTACTGCTGTGATGTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCATTAG
CCAAGTTTACTTCACTCCATTCTCCTGCTGATATCAAGCAGAAAAATATTGATGCCATCAAGGCAATAGTTACAATTGCAGATGAAGATGGGAATTATTT
GCAAGAAGCTTGGGAACACATTTTGACATGTGTCTCACGCTTCGAACATTTGCATCTCATGGGAGAGGGTGCTCCTCCAGATGCTACCTTTTTTGCTTTT
CCCCAGAGTGACTCAGAAAAGTCAAAACAAACTAAGTCAACCATCCTCCCTGTTCTGAAAAAGAAGGGACCTGGAAGGATGCAGTATGCAGCTGCTAGTG
TGATGAGAGGTTCATATGATAGTGCTGGTATTGGTGGAAACACAGCTGGGGCTGTTACTAGTGAGCAGATGAACAATTTAGTCTCCAATTTAAACATGTT
AGAACAAGTTGGAAGCTCTGAAATGAGTCGCATATTCACACGGAGCCAAAAGTTAAACAGTGAGGCAATAATTGACTTTGTCAAGGCTCTTTGCAAGGTC
TCCATGGAGGAACTGCGATCAGCTTCTGATCCACGGGTCTTTAGCCTTACAAAGATTGTTGAGATTGCGCACTATAACATGAATCGTATCAGGCTTGTAT
GGTCAAGCATCTGGCACGTGCTTTCTGATTTCTTTGTAACCATCGGCTGTTCTGAAAACCTTTCAATTGCAATTTTTGCAATGGACTCTTTACGTCAATT
ATCAATGAAATTCTTAGAGCGGGAAGAGTTGGCAAACTATAACTTTCAGAATGAGTTTATGAAGCCGTTTGTTATTGTTATGCGGAAGAGTAATGCTGTT
GAAATCAGAGAATTGATTATCAGATGTGTCTCACAAATGGTTCTCTCTCGTGTCAATAATGTTAAATCAGGATGGAAGAGCATGTTCATGGTTTTCACAA
CAGCAGCTTATGATGACCACAAAAACATTGTACTCTTGGCCTTTGAAATAATTGAAAAGATTATTAGAGATTACTTCCCATACATCACGGAAACTGAAAC
AACCACCTTTACAGATTGTGTGAATTGCCTGATAGCATTCACCAATAGTCGATTCAACAAAGACATTAGCCTTAATGCAATTGCTTTTCTTCGATTTTGT
GCCACAAAACTTGCGGAAGGAGATCTTGGATTTTCATCAAGGAACAAGGACAAGGAAGCCCCTGGGAAAATTTCAATACCTTCACCTCGGACTGGAAAAG
ATGGAAAACAAGAGAATGGAGAAATCACGGATAGGGAAGATCATCTCTATTTCTGGTTCCCTTTGTTGGCTGGTTTATCAGAACTTAGCTTTGACCCTAG
GCCTGAAATCAGGAAGAGTGCCTTGCAAATTTTGTTTGAAACTTTACGCAATCATGGCCACCTTTTTTCTCTACCTTTATGGGAAAGAGTCTTTGAGTCG
GTCTTATTTCCTATATTTGACTATGTGCGGCATGCAATTGATCCTACTGGAGGCGACGCCCCTGAGCAGGGGATTGATGGTGATACGGGTGAGCTTGATC
AAGATGCGTGGCTCTATGAGACATGCACCTTGGCTCTCCAACTGGTTGTGGATCTTTTTGTAAAGTTCTACAACACTGTCAATCCGCTTTTAAGAAAGGT
GCTATTGCTTCTGGTTAGCTTCATTAGGCGTCCTCACCAAAGTCTTGCTGGTATTGGTATTGCGGCATTTGTTCGTTTGATGAGCAATGCTGGAGATCTT
TTTTCAGAGGAGAAGTGGCTGGAGGTGGTTTTGTCATTAAAAGAGGCTGCCAATGCTACACTCCCTGATTTCTCTTACATTGTTAGTGGAGAAGCCTCGG
TAATAAGCCATGAACAAAGTGACGGAGAGAAGTCTGGTGACATGCCTGATGGTGATTCAGAGGGGCTGATGGCGCACCGTCTTTATTCTTCTATATCTGA
TGCAAAGTGTCGAGCTGCTGTTCAACTTCTATTAATTCAGGCGGTGATGGAGATCTACAGCATGTATCGGTCTCACCTTTCAGCTAAAAGTGCCTTGGTG
CTCTTTGATGCTTTGCATGACGTGGCATCTCATGCTCACAGTATCAACACCAATATTGCATTACGTTCAAAGCTACTAGAGTTTGGCTCTATGACCCAAA
TGCAAGATCCTCCACTATTACGCCTGGAGAACGAGTCCTATCAAATTTGCCTAACATTCCTACAAAATCTTATACTGGACAGACCTCCAACTTATGATGA
AGCTCAAGTGGAATCCTGCCTTGTCAATCTCTGTGAGGAGGTTTTACAGTTTTACATTGCAACTGCCCATGCTGGACAGACATCAGAAACTTCTCCCAGT
GGCCAATCCCAGTGGCTGATTCCTTTAGGTTCTGGAAAACGAAGGGAATTGGCCACACGTGCTCCTCTTATCGTTGCAACTCTCCAGGCTATCTGTAGTT
TGGGAGATTCTTTGTTTGAGAAGAACTTGGCACATTTCTTCCCTCTTCTTTCAAGCTTGATAAGTTGTGAACATGGGTCAAATGAGGTCCAGGTTGCTCT
CAGCGATATGCTCAGCTCATCAGTGGGTCCTGTTTTGCTTCGGTCTTGTTGA
AA sequence
>Potri.014G070600.1 pacid=42763264 polypeptide=Potri.014G070600.1.p locus=Potri.014G070600 ID=Potri.014G070600.1.v4.1 annot-version=v4.1
MASTEADSRLSQVVSPALEKIIKNASWRKHSKLGHECKSVLEILTSPEPQEQPPPTSTSDDSSPSESSLPAPLHDGGSHEYSLAESETILSPLINACNTQ
FLKIVDPAVDCIQKLIAHGYIRGEADPTGGAEAKLLAKLIESVCKCYDLGDDGVELLVLRTLLSAVTSISLRIHGDSLLQIVRTCYDIYLGSKNVVNQTT
AKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPMEKSDVDGSMAVFVQGFITKIMQDIDGVLNPGTPSKASMMGAHDGAFETTTSTVESTNPADLLD
STDKDMLDAKYWEISMYKTALEGRKGELADGEGERDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALTDPQLMRGKIVALELLKILLENAGAVFRT
SDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNYQQKIIVLRFLDKLCVDSQILVDIFINYDCD
VNSSNIFERMVNGLLKTAQGAPPGTATTLLPPQEVSMKLEAMKCLVGILKSMGDWMNKQLRIPDPHSTKKPDAAENSPEPGSLPMANGNGDEPVDGSDSH
SETSTEASDVSTIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGHSAEEIAAFLKNASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQDLEFDE
AIRVFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFSSADTAYVLAYSVIMLNTDAHNPMVKSKMSADDFIRNNRGIDDGKDLPEEFLRSLFERISKSE
IKMKEDNLDLQQKQSLNSNRILGLDSILNIVIRKRGEEKHMETSDDLIRHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPLDQSDDE
VVIALCLEGIRCAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLMGEGAPPDATFFAF
PQSDSEKSKQTKSTILPVLKKKGPGRMQYAAASVMRGSYDSAGIGGNTAGAVTSEQMNNLVSNLNMLEQVGSSEMSRIFTRSQKLNSEAIIDFVKALCKV
SMEELRSASDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV
EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC
ATKLAEGDLGFSSRNKDKEAPGKISIPSPRTGKDGKQENGEITDREDHLYFWFPLLAGLSELSFDPRPEIRKSALQILFETLRNHGHLFSLPLWERVFES
VLFPIFDYVRHAIDPTGGDAPEQGIDGDTGELDQDAWLYETCTLALQLVVDLFVKFYNTVNPLLRKVLLLLVSFIRRPHQSLAGIGIAAFVRLMSNAGDL
FSEEKWLEVVLSLKEAANATLPDFSYIVSGEASVISHEQSDGEKSGDMPDGDSEGLMAHRLYSSISDAKCRAAVQLLLIQAVMEIYSMYRSHLSAKSALV
LFDALHDVASHAHSINTNIALRSKLLEFGSMTQMQDPPLLRLENESYQICLTFLQNLILDRPPTYDEAQVESCLVNLCEEVLQFYIATAHAGQTSETSPS
GQSQWLIPLGSGKRRELATRAPLIVATLQAICSLGDSLFEKNLAHFFPLLSSLISCEHGSNEVQVALSDMLSSSVGPVLLRSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60860 SEC7-like guanine nucleotide e... Potri.014G070600 0 1
AT2G45540 WD-40 repeat family protein / ... Potri.002G150000 2.00 0.8890
AT1G71410 ARM repeat superfamily protein... Potri.013G098700 2.64 0.8275
AT3G23660 Sec23/Sec24 protein transport ... Potri.019G003100 2.82 0.8462
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.016G138000 3.00 0.8444
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.001G185050 4.79 0.8056
AT5G16300 Vps51/Vps67 family (components... Potri.010G177200 6.48 0.8280
AT5G23630 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE... Potri.004G137100 8.12 0.8195
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Potri.018G072600 8.36 0.8157
AT4G32640 Sec23/Sec24 protein transport ... Potri.013G035800 10.00 0.8030 CEF.2
AT5G16300 Vps51/Vps67 family (components... Potri.008G079700 15.49 0.8265

Potri.014G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.