Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 94 / 3e-24 Calcium-binding EF-hand family protein (.1.2) AT1G66400 93 / 6e-24 CML23 calmodulin like 23 (.1) AT5G37770 92 / 2e-23 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 92 / 2e-23 EF hand calcium-binding protein family (.1) AT2G15680 86 / 1e-20 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT3G10190 84 / 9e-20 Calcium-binding EF-hand family protein (.1) AT2G43290 83 / 1e-19 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT1G73630 82 / 2e-19 EF hand calcium-binding protein family (.1) AT1G05990 80 / 5e-19 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT1G66410 80 / 6e-19 ACAM-4, CAM4 calmodulin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089400 [exp] 108 / 5e-30 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 105 / 2e-28 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 105 / 2e-28 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G126200 [exp] 96 / 6e-25 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.009G102500 [exp] 91 / 9e-23 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.017G029700 [exp] 87 / 7e-21 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G042900 [exp] 80 / 2e-18 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.012G048200 [exp] 79 / 2e-18 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.006G026700 [exp] 78 / 3e-18 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004330 [exp] 103 / 7e-28 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 103 / 8e-28 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10009127 [exp] 101 / 7e-26 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10014050 [exp] 97 / 6e-25 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10019863 [exp] 92 / 3e-23 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10018012 [exp] 91 / 5e-23 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 86 / 4e-21 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 84 / 4e-20 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009564 [exp] 81 / 2e-19 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 82 / 9e-19 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.014G070700.1 pacid=42764336 polypeptide=Potri.014G070700.1.p locus=Potri.014G070700 ID=Potri.014G070700.1.v4.1 annot-version=v4.1 ATGCTGAATTCTTTCAGAACTTGCTTGAGCTCTCTACACAGGAGGGCGAAAAACTTTCTTCAACAGCCGAGAAACACCGAGAGAGTTAGTAAATGCAACA GGAGAAAAAACAAAAGATTATTGTCATCAAGTTTTGATTTGCTAACTTACTCTTTCGCGGCCATGGAAATGTCCAACCAATTCAAACAAGTTTTCAAGGT CATAGACGCGAACGGGGATGGCAAGATATCTTGCCATGAGCTCAGTGAAGTTCTTCTGTGTCTTGGATATGAAAAATCAAAAGCAGCTTGGGAAGCTGAA AGAATGGTGAGAGAAATGGATTGTAACGGAGATGGATTTATCGATTTAGATGAATTCATCAATGCTGTGAATGACGATGGAAACTTTGGTAGCGGTAACA AGGAAGATTATCTCATGGATGTTTTTCTAATTTTTGATACCGATAAGAATGGCCTAATCTCGGCGAGGGAGTTGCAGACTGTTCTTACTAGCCTCGGATG CAAAAAATGCAGCCTTGAAGATTGCAGGCGTATGATAAAAGGGGTCGATAAAGATGGCGATGGTTTCGTGGATTTTCATGAATTTCGATCGATGATGACA ACAAGTGCAAGCTGGCTAGAAGATTAG
AA sequence Show only first row Show all	>Potri.014G070700.1 pacid=42764336 polypeptide=Potri.014G070700.1.p locus=Potri.014G070700 ID=Potri.014G070700.1.v4.1 annot-version=v4.1 MLNSFRTCLSSLHRRAKNFLQQPRNTERVSKCNRRKNKRLLSSSFDLLTYSFAAMEMSNQFKQVFKVIDANGDGKISCHELSEVLLCLGYEKSKAAWEAE RMVREMDCNGDGFIDLDEFINAVNDDGNFGSGNKEDYLMDVFLIFDTDKNGLISARELQTVLTSLGCKKCSLEDCRRMIKGVDKDGDGFVDFHEFRSMMT TSASWLED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18210			Calcium-binding EF-hand family...		Potri.014G070700 [exp]	0	1
AT5G20670			Protein of unknown function (D...		Potri.006G140600 [exp]	2.00	0.9321
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	7.48	0.9331
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G105400 [exp]	8.06	0.9312
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096132 [exp]	15.87	0.9326
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Potri.006G229200 [exp]	25.92	0.9145
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	26.07	0.8828
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.005G145000 [exp]	26.72	0.9248
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096300 [exp]	29.10	0.9220
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.002G009800 [exp]	39.19	0.9190	CAT1,Pt-CAT1.4
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096425 [exp]	41.02	0.9150

Compare expression of checked genes

Potri.014G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.