Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01950 1359 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 1203 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G54870 518 / 9e-170 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 214 / 7e-61 ATP binding microtubule motor family protein (.1.2) AT2G37420 202 / 2e-53 ATP binding microtubule motor family protein (.1) AT3G44730 201 / 7e-53 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G28620 198 / 4e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 196 / 4e-52 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G72250 197 / 7e-52 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G47500 197 / 8e-52 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149400 [exp] 1661 / 0 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 1281 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1266 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.010G227000 [exp] 553 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 294 / 3e-93 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 212 / 6e-60 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G082900 [exp] 209 / 6e-56 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 202 / 2e-53 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G467600 [exp] 202 / 3e-53 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009241 [exp] 1395 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 1306 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 1195 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10006670 [exp] 1066 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038696 [exp] 524 / 9e-171 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 521 / 2e-168 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10024429 [exp] 209 / 2e-55 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 207 / 4e-55 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10036146 [exp] 206 / 1e-54 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 201 / 6e-53 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.014G070900.1 pacid=42764009 polypeptide=Potri.014G070900.1.p locus=Potri.014G070900 ID=Potri.014G070900.1.v4.1 annot-version=v4.1 ATGGCATCATCCTGTAATGGTGCTTTTCGAAATGGCAGCAGCAGCGCTCAAAGACCACTTAAACCTCTCACTGCTTCAAATCTCAAATCTACCTCGTTCA AATCCAGAGTCCATTCCTCCCACGCTCCTCCTCCCCCTTTCCGCCGCAGCTACCCTTCCAACTTCTCCGCCACCGCCGACGGAGTACCGGGAAGAGTTAG AGTCGCAGTGAGATTGCGGCCACGAAATGCCGAGGAGTTGGCAGCAGATGCGGATTTTGCTGATTGTGTTGAGTTGCAGCCAGAGCTTAAGAGGTTGAAG CTTCGGAAAAACAATTGGGACGCTGATACGTATGAGTTCGATGATGTGCTTACTGAATTTGCGTCGCAGAAGCGAGTTTATGAAGTTGTTGCTAAGCCTG TTGTTGAGAGCGTTCTAGATGGTTACAATGGGACAGTGATGGCTTATGGTCAGACTGGTACTGGGAAAACTTTCACTCTTGGACACCTGGGAGATGATGA CACAGCTTCTCGTGGTATCATGGCTCGTGCAATGGAGGATGTTTTAGCAGATATCTCTCCAGAGACCGATTCTGTCTCAGTGTCATATTTGCAGCTTTAC ATGGAGGCCGTCCAAGACCTTCTTGTTCCAGCAAATGATAATATTTCCATCGTGGAAGATCCAAAAACTGGTGATGTTTCACTACCTGGGGCAACTGTTG TACAAATCAGGGACCAACAGAGTATTGTGGAGCTGCTAAGATTAGGGGAAGCTAATAGAATTGCTGCAAATACAAAGTTGAATACTGAATCTTCTCGTAG TCATGCTATTCTGATGGTTCATGTTAAGAGGTCATTTGCTGGACGAGAAGATGCTCTTTCAAGTGAAATCGATAATGCATCTCACTTGGTCAAACCTTCA AAACTTATTGTTCGGAAAAGCAAGCTGGTTTTGGTAGATCTGGCAGGTTCAGAACGTGTTCACAAGTCAGGAAGTGAGGGACATATGCTGGAGGAAGCCA AGTCTATTAATCTCTCGCTCAGTGCATTAGGAAAGTGCATAAATGCACTGGCTGAGAATAGTCCCCATGTTCCGATTCGTGATTCAAAACTTACGAGGTT GCTTAAAGATTCATTTGGAGGCACAGCAAGAACTTCGTTAATTGTGACCATTGGCCCATCACCACGCCATCGGGGGGAAACTTCAAGTACTATATTGTTT GGACAAAGGGCAATGAAGGTGGAGAACATGTTGAAAATAAAGGAAGAGTTTGATTACAAAAGTTTATCTAGAAAGCTTGAAATACAAGTGGACAAGCTCA TTGCAGAAAATGAAAGGCAGCAGAAAGCCTTTGACAATGAAGTTGAAAGAATAAATCAAGAAGCACAAAATCGAATTACTGAGGTGGAAAGGAACTTTGC AGAAGCGTTAGAGAAGGAGAGGCTAAAGTGTCAGATGGAATACATGGAATCTGTCAAGGAGCTAGAGGAAAAATTGGTAGCAAATCAGCGAAGGCATGAC TGTGATGGCTTCATCAATGGTAATTGCAATGGAGAGGAGCTGGGCTCTGTTTCTGAGGAAGTTTCCGAGCTCAGAAAGTTACTTCAAAATGAAATTCAGC TAAGAAAGGCAGCTGAAGATGAGCTCAACAAACTTAAGAGTCAATTTGAACAATTTATGCAGCCTGGGGCTGGTGGAGACACAGAGATTGTAAGGCTTCA CAGGATCTTGGAGGATGAAGCTTATAAGAAAAAGAGTCTGGAAGAAGAAGTTGCGATCCTACAAAGTCAGTTATTGCAATTAACCTTTGAAGCTGGTCAG GCAAAAGAGAGTCTTGAAAGAAGTGGATCTGCAAATGGTTTCAATGGTGTTGATCCTCGTATGTCACAAGTTAGGCACTTACAGTTCAAAGAGACTGTGA ATGGACAGAAGGCTCCAATTGCCCCCCTTTATGAACACGTTGGATTGCAAAAAATTTTGTCGCTGCTCGAATCAGAAGATGCCAATGTACGAATACACGC TGTAAAAGTGGTGGCTAATCTAGCTGCTGAAGAAGCAAATCAAGAAAAGATTGTTGAATCTGGTGGTCTTACTTCCTTGCTGATGCTTCTTAGAAGCTTT GAGGATGAAACTATTCGCAGGGTAGCAGCTGGTGCAATTGCCAATCTTGCAATGAATGAAGCAAATCAAGAACTAATCATGGTTCAAGGGGGAATTAGTT TGTTATCTATGACAGCAGCTGATGCTGAGGATCCTCAAACTCTACGCATGGTTGCTGGAGCTATTGCAAATCTGTGTGGAAACGATAAGCTACAAATGAA GTTGAGGTCTGAAGGTGGGATAAGGGCTTTGCTAGGAATGGAGAGATGTGGACATCCTGATGTTCTTTCCCAAGTTGCTCGTGGGATTGCAAACTTTGCA AAATGCGAGTCCCGAGCATCTACTCAAGGATTAAAAAGTGGCAGATCTCTTCTTATAGAAGATGGTGCACTTCCATGGATTGTACAAAATGCCAATAATG AAGCTGCACCAATCAGACGCCACATTGAGCTTGCCCTATGCCACCTAGCACAGCAAGAAGTAAATGCAAAAGAAATGATCAGTGGAGGTGCACTTTGGGA GCTAGTTCGTATCTCACGAGATTGTTCTCGAGAGGACATAAGAACCCTTGCTCGCCGGACTTTGAATTCAAGTTCCACCTTCAGGTCTGAAATGCGGCGG TTACGGATAGAGTGTTGA
AA sequence Show only first row Show all	>Potri.014G070900.1 pacid=42764009 polypeptide=Potri.014G070900.1.p locus=Potri.014G070900 ID=Potri.014G070900.1.v4.1 annot-version=v4.1 MASSCNGAFRNGSSSAQRPLKPLTASNLKSTSFKSRVHSSHAPPPPFRRSYPSNFSATADGVPGRVRVAVRLRPRNAEELAADADFADCVELQPELKRLK LRKNNWDADTYEFDDVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGHLGDDDTASRGIMARAMEDVLADISPETDSVSVSYLQLY MEAVQDLLVPANDNISIVEDPKTGDVSLPGATVVQIRDQQSIVELLRLGEANRIAANTKLNTESSRSHAILMVHVKRSFAGREDALSSEIDNASHLVKPS KLIVRKSKLVLVDLAGSERVHKSGSEGHMLEEAKSINLSLSALGKCINALAENSPHVPIRDSKLTRLLKDSFGGTARTSLIVTIGPSPRHRGETSSTILF GQRAMKVENMLKIKEEFDYKSLSRKLEIQVDKLIAENERQQKAFDNEVERINQEAQNRITEVERNFAEALEKERLKCQMEYMESVKELEEKLVANQRRHD CDGFINGNCNGEELGSVSEEVSELRKLLQNEIQLRKAAEDELNKLKSQFEQFMQPGAGGDTEIVRLHRILEDEAYKKKSLEEEVAILQSQLLQLTFEAGQ AKESLERSGSANGFNGVDPRMSQVRHLQFKETVNGQKAPIAPLYEHVGLQKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVESGGLTSLLMLLRSF EDETIRRVAAGAIANLAMNEANQELIMVQGGISLLSMTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMERCGHPDVLSQVARGIANFA KCESRASTQGLKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQQEVNAKEMISGGALWELVRISRDCSREDIRTLARRTLNSSSTFRSEMRR LRIEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.014G070900 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	6.32	0.7756
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	10.39	0.8099
AT5G11850			Protein kinase superfamily pro...		Potri.006G229400 [exp]	13.67	0.7565
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Potri.010G003300 [exp]	14.66	0.7808
AT3G28850			Glutaredoxin family protein (....		Potri.017G081600 [exp]	16.61	0.7903
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	20.49	0.7922
AT3G10540			3-phosphoinositide-dependent p...		Potri.008G028800 [exp]	24.49	0.7516
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	26.00	0.7808
AT1G76660			unknown protein		Potri.005G260000 [exp]	30.46	0.7453
AT5G50350			unknown protein		Potri.008G012000 [exp]	35.70	0.7135

Compare expression of checked genes

Potri.014G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.