Plant FIBer expression Database

Potri.014G071100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45440 585 / 0 DHDPS2 dihydrodipicolinate synthase (.1)
AT3G60880 577 / 0 DHDPS, DHDPS1 dihydrodipicolinate synthase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G149500
[exp]
672 / 0 AT2G45440 592 / 0.0 dihydrodipicolinate synthase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015861
[exp]
582 / 0 AT2G45440 605 / 0.0 dihydrodipicolinate synthase (.1)
Lus10009302
[exp]
579 / 0 AT2G45440 604 / 0.0 dihydrodipicolinate synthase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00701 DHDPS Dihydrodipicolinate synthetase family
Representative CDS sequence
>Potri.014G071100.1 pacid=42764137 polypeptide=Potri.014G071100.1.p locus=Potri.014G071100 ID=Potri.014G071100.1.v4.1 annot-version=v4.1
ATGAAGAGCTATAGCGTGTGCTTGAGGGAGTCTGCTCTCCAGCTTCCGCGCCATAATTGCGTTGATAATTACAAGAGGAGGAGTGGAAAATGGAGGCCTC
CCCAAGCTGCTGCAAAACCTAATTTGCATCTTCCGATGCGCAGCTTTGAAGTTAAAAACATGACATCAGCAGAGGATATGAAATCTCTTAGATTGATAAC
AGCCATCAAAACCCCATATCTGCCTGATGGTAGATTTGATCTTGAAGCGTATGATGCGTTGGTGAATATGCAGATTGCTAACGGCGCTGAAGGTGTTGTA
GTTGGTGGCACAACTGGTGAAGGTCAGCTGATGAGCTGGGATGAACACATAATGCTTATTGGCCACACCGTCAACTGTTTTGGTAGCTCAATCAAGGTGA
TCGGAAACACTGGAAGTAACTCTACAAGGGAAGCGATTCATGCCACAGAGCAAGGTTTTGCGGTCGGAATGCATGCTGCTCTTCATATCAATCCATACTA
CGGAAAAACCTCCGTGGAGGGCATGGTTTCTCATTTTGACAGCGTGCTCCCTATGGGCCCAACTATTATATACAATGTGCCTGGCAGGACTGGCCAAGAT
ATCCCCCCACGCGTTATTCATACTATAGCTCAGAGTCCGAACTTGGCAGGCGTTAAGGAATGTGCTGGTAATGACCGGGTTGAACAGTATACAGATAAAG
GAATTGTGGTGTGGAGTGGGAATGATGATCAGTGCCATGATGCAAGGTGGAACCATGGGGCAACTGGAGTGGTTTCTGTTACTAGCAACTTGGTTCCGGG
TTTAATGCGCAGACTTATGTTTGAGGGGAAGAATGCTGAACTAAATTCAAAACTCCTGCCCCTTATCGACTGGCTATTTCAGGAGCCGAACCCCATTGCA
TTAAACACAGCTCTTGCTCAACTTGGGGTTGCTAGACCAGTTTTCAGACTGCCATATGTGCCTCTTCCTTCGGCTCAGAGGGTAGAATTTGTGAATTTGG
TTAAGAAAATTGGCCGGGAGAATTTTGTAGGAGAAGAAGACGTTCAGGTTCTCGAAGACGATGACTTCATCTTGATAGCTCGTCTGTGTTAG
AA sequence
>Potri.014G071100.1 pacid=42764137 polypeptide=Potri.014G071100.1.p locus=Potri.014G071100 ID=Potri.014G071100.1.v4.1 annot-version=v4.1
MKSYSVCLRESALQLPRHNCVDNYKRRSGKWRPPQAAAKPNLHLPMRSFEVKNMTSAEDMKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIANGAEGVV
VGGTTGEGQLMSWDEHIMLIGHTVNCFGSSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSVEGMVSHFDSVLPMGPTIIYNVPGRTGQD
IPPRVIHTIAQSPNLAGVKECAGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVVSVTSNLVPGLMRRLMFEGKNAELNSKLLPLIDWLFQEPNPIA
LNTALAQLGVARPVFRLPYVPLPSAQRVEFVNLVKKIGRENFVGEEDVQVLEDDDFILIARLC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Potri.014G071100
[exp]
0 1
AT2G30600 BTB/POZ domain-containing prot... Potri.002G010100
[exp]
2.00 0.7389
AT5G34930 arogenate dehydrogenase (.1) Potri.008G074500
[exp]
8.83 0.7276
AT4G36730 bZIP GBF1 G-box binding factor 1 (.1.2) Potri.007G029400
[exp]
12.24 0.7356
AT4G03020 transducin family protein / WD... Potri.014G136000
[exp]
12.72 0.7597
AT2G27310 F-box family protein (.1) Potri.005G208200
[exp]
13.07 0.6994
AT2G44130 Galactose oxidase/kelch repeat... Potri.003G218400
[exp]
20.83 0.7243
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
22.00 0.6960
AT4G28240 Wound-responsive family protei... Potri.019G116300
[exp]
23.23 0.7063
AT1G65410 ABCI13, TGD3, A... TRIGALACTOSYLDIACYLGLYCEROL 3,... Potri.002G212701
[exp]
36.87 0.6373
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Potri.004G013200
[exp]
44.15 0.6412 Pt-ATGLX1.1

Potri.014G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.