Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45460 815 / 0 FHA SMAD/FHA domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015860 [exp] 966 / 0 AT2G45460 733 / 0.0 SMAD/FHA domain-containing protein (.1.2.3) Lus10009303 [exp] 953 / 0 AT2G45460 727 / 0.0 SMAD/FHA domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.014G071400.3 pacid=42763253 polypeptide=Potri.014G071400.3.p locus=Potri.014G071400 ID=Potri.014G071400.3.v4.1 annot-version=v4.1 ATGGTGGTAGGAGACAAAAACCCTGAGACCCCGTCGGCTCAAAAACTCTCACAATCAGACTCCTCACAACATGCCCCTCCATGCCCTAACCCCCAGGATG ACGCGTCGCCCAAGAATCAACCACAAACACCCAAAGATTTCATACTCTCAGTAGCCTCCAAGCTCTCTTCTCAACCTCTCACTAACCCTGATCCTAACGT CTGGGGTGTCCTCACTGCTATTTCCAATAACGCCCGTAAACGCGCTCAGGGTATTAATATTGTATTGACCGGGGAGGAGCATTGTATTGGAAGGTTAGTT GAGGATACGCGGTTTCAAGTTGAAGCGAATGCTGTTAGCGGAAATCATTGTAAAATATTTAGGAAAAATGCCGTGGCCGAGTTATCTGATGTAACTGTTT TCTTGAAAGATACGAGTACGAATGGGACTTATCTTAATTGGAAGAAACTGACTAAGAGTAGCCCTGAAGGCAAAGTTCAACATGGGGATATTATATCCTT TGCTGCTCCTCCACAGCATGAACTTGCAGTTGCATTTGTATATCGAGAAGTTGTTAGGTCTAATTCTTCAATGGAAGGTGCAGTTGCAAAAAGAAAAGCA GAGGATATTGTTGGGGAAAACAAGAGAATGAAAGGTATTGGAATTGGTGCTCCTGAGGGTCCTATATCTCTTGATGATTTTCGGATTCTTCAACGGTCAA ACAAGGAATTAAGGAAGCAATTGGAAAATCAAGTCCTTACAATTGACACCTTGCGCAACGAGCAGCAAAATACCATTGATCGTCATGAAAATGAAATAAA AGAGATGAAAGAATCTGTTGCAAAATCGTACCTTGACCACATTAAGGAATTGCAAAATATGTTGGATGCCAAACAAAAGGAGCTTGTTGAGGTCAATAGA ATATCAGCTGAACAAAAACATGTCTTGGAAGACCTTAACGAAAGGCTTACTGCTTCTAGGCAGTCATGTAATGAAGCAAACGAAGTAATGAAGAGTCAAA AGGCATCTATAGCTGAACTCGAGGCACAACTAGAAGAAGAACGAGATCAGAGAAAAGAAGAAAGGCAAAAGGCTACTTCTGATTTAAAGGCAGCAGTACA GAGAGTTCAGTCTGAGGCACAAGAGGAAGTCAAACGACTATCTAATGCTGCCTTGCAACAGGAAAGAGAGCTGGAAGAAGAAATCAATAAGCTTCAGGAA AAAGATAAAAAGTGGTGCTCACAAGTAGAAACCTTGATGCCCAAACTGGAAGAAACACGGCAAAAATTGGTTGCATCTGACAATAAAATTCGCCAGCTAG AAGCTCAAGTTTGTGAAGAGCAACTGGCCTCTGCAAATGGAAGAAAACAGAGAGTGGATGAACTTGAACAAGAAACGTATAGGCTGAGGAAAGAACTTGA GAACGAAAAGCAGGCGGCTCGAGAAGAAGCTTGGGCTAAAGTTTCTACCCTTGAACTGGAGATAAATGCTGCAATGCGGGATCTTGAGTTTGAAAGACGG AGGTTAAAAGGTGCCAGGGAAAGAATAATGCTTAGGGAGACACAGCTACGGGCATTTTATTCCACGACCGAGGAGATATCTGGACTCTTTACCAAGCAGC AGGAACAACTGAAGGCAATGCAAAGGACATTGGAAGATGAGGAGAATTATGATAACACATCAGTGGATATTGATCTGAATTTAAATCCCGGGAACATGGA TGGCAATTTGGTGAGAGACAATGGAATGACTCGGTATCATAGCAACAGCAGGGCAAAGGCTGGCTTAGGTCCTTCAGCTCAGAGATTTGACAGGAACCAA ACTGTTACTTCTAGTGATGGAGCAAGTGTCACTGAGAAGCATGACTGTGATACCAGAAGTCAAGGAGACCAAGATACTCGAGAGGAAGAATTTACTAGTG CTGAGCATCACGTTAAGAGCGGCTTTGGTTCTGAAATTGATGGTGTTGGCACAGCACCTGTTTTGGAAGGAGAAACCATTGGAACGGAGCAAGTTCTTGA AACAGAAAGCCTAGGTGTTGATGGGGAGAGGAATTTTGATTTGAACAAATATAGCTCTCTGGCTGGGGACACAATGCAAGTTGAAGGTGAAGATTGTGTG CATGAAGGTGATGAGCACGTTCAGACAATTCATCTTGATGGCTTGCATCACTCTCAATCAAGTAATCTCCCTGAGAATCAGAGGGATGTGGAAGATACGG AACCTGGAGGCATAATCAGAACACAAGACCTTTTAGCTTCGGAAGTTGTTGGCAGTTGGGCTTGCAGCACTGCTCCTTCAGTCCATGGCGATAATGAATA TCCTGGAAGTGGAGATGATGATGAGAAACGCGGTGCTGATCGTCATGATTCTAATGGTCAAGTGGCTGAGAGTCAAAGTACGCCATCTTCTGATGCTGTA GCCATCCGAAGGAATCGTGAATGTCGAGCATTAAGTGAGATGATTGGAATTGTTGCTCCTGATTTAAAAGATCAGTTTGGCACTGATGTGGATGGTGATT GTGATGGAGGAAAGGAGAGACTCGGTTCTTCCTCTAACTCAGATACGGAGGCTTGTTCTGACAGTAATGATAATGAGGAATGTGCCGAAGGTGGATCTAT GTCGGATACAGAGACTGAATGTAGTGATAAACCTGTTGAGGATAAAAATCTGGATGATGCAATGGATGAAGATACTGATGCCACACAAGAAGATTCTCAG TGA
AA sequence Show only first row Show all	>Potri.014G071400.3 pacid=42763253 polypeptide=Potri.014G071400.3.p locus=Potri.014G071400 ID=Potri.014G071400.3.v4.1 annot-version=v4.1 MVVGDKNPETPSAQKLSQSDSSQHAPPCPNPQDDASPKNQPQTPKDFILSVASKLSSQPLTNPDPNVWGVLTAISNNARKRAQGINIVLTGEEHCIGRLV EDTRFQVEANAVSGNHCKIFRKNAVAELSDVTVFLKDTSTNGTYLNWKKLTKSSPEGKVQHGDIISFAAPPQHELAVAFVYREVVRSNSSMEGAVAKRKA EDIVGENKRMKGIGIGAPEGPISLDDFRILQRSNKELRKQLENQVLTIDTLRNEQQNTIDRHENEIKEMKESVAKSYLDHIKELQNMLDAKQKELVEVNR ISAEQKHVLEDLNERLTASRQSCNEANEVMKSQKASIAELEAQLEEERDQRKEERQKATSDLKAAVQRVQSEAQEEVKRLSNAALQQERELEEEINKLQE KDKKWCSQVETLMPKLEETRQKLVASDNKIRQLEAQVCEEQLASANGRKQRVDELEQETYRLRKELENEKQAAREEAWAKVSTLELEINAAMRDLEFERR RLKGARERIMLRETQLRAFYSTTEEISGLFTKQQEQLKAMQRTLEDEENYDNTSVDIDLNLNPGNMDGNLVRDNGMTRYHSNSRAKAGLGPSAQRFDRNQ TVTSSDGASVTEKHDCDTRSQGDQDTREEEFTSAEHHVKSGFGSEIDGVGTAPVLEGETIGTEQVLETESLGVDGERNFDLNKYSSLAGDTMQVEGEDCV HEGDEHVQTIHLDGLHHSQSSNLPENQRDVEDTEPGGIIRTQDLLASEVVGSWACSTAPSVHGDNEYPGSGDDDEKRGADRHDSNGQVAESQSTPSSDAV AIRRNRECRALSEMIGIVAPDLKDQFGTDVDGDCDGGKERLGSSSNSDTEACSDSNDNEECAEGGSMSDTETECSDKPVEDKNLDDAMDEDTDATQEDSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	1.41	0.9279	CPC902,TTN8.3
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	2.44	0.9267	TTN8.2
AT5G07400	FHA		forkhead-associated domain-con...		Potri.012G111800 [exp]	2.82	0.9007
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	3.46	0.8798
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	4.24	0.9031	Pt-FHY3.2
AT3G22380		TIC	time for coffee (.1.2)		Potri.008G151200 [exp]	7.21	0.8794
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	7.48	0.8855
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	8.36	0.8813
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	9.48	0.8983	MYA1.1
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	10.39	0.8816

Compare expression of checked genes

Potri.014G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.