Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FLA8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45470 494 / 1e-174 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 494 / 2e-174 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G12730 265 / 6e-85 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 257 / 1e-81 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G12660 132 / 9e-36 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT3G46550 115 / 3e-28 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G24450 110 / 1e-27 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT5G03170 102 / 5e-25 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT4G31370 91 / 2e-20 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G60490 90 / 3e-20 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168100 [exp] 267 / 1e-85 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 266 / 4e-85 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 263 / 4e-84 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G037800 [exp] 145 / 6e-40 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.006G276200 [exp] 132 / 3e-35 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.018G005100 [exp] 130 / 8e-35 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G174900 [exp] 130 / 1e-33 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G097000 [exp] 128 / 1e-32 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G129200 [exp] 104 / 9e-26 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009235 [exp] 491 / 3e-173 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 300 / 2e-101 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10016617 [exp] 268 / 6e-86 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 263 / 5e-84 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 252 / 1e-79 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 246 / 9e-77 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 244 / 1e-76 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 192 / 3e-57 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10040821 [exp] 137 / 5e-36 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 129 / 3e-33 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.014G071700.1 pacid=42762469 polypeptide=Potri.014G071700.1.p locus=Potri.014G071700 ID=Potri.014G071700.1.v4.1 annot-version=v4.1 ATGGCTACGTTACAGTACTCTCTCCTTCTTTCCTTCACACTATCAGCACTCGTCTCCACCATCTTAGCCCACAACATAACCGACATTCTCTCAGGCTTCC CGGAATACTCCGAGTTCAACAAGTACCTTACCCAAACAAAACTAGCCGATGAAATCAACACTCGCCAGACAATAACTGTCTTGGCTCTCAACAATGGGGC TATGACTGCTCTTGCAGCCAAACATCCACTTTCAGTCATCAAGAATGCCCTTAGTCTTCTTGTTGTCCTTGATTACTATGACCCAACTAAACTCCATCAG ATCTCCAAAGGCACCACGTTATCCACCACTCTCTACCAAACTACTGGAAATGCCCCTGGTAACCTCGGATTCGTCAACATTACAGATCTCCAAGGTGGTA AAGTCGGCTTCGGCTCCGCTGCTCCCGGCTCGAAACTTGATTCCTCTTACACTAAATCTGTGAAGCAAGTCCCTTATAATATTTCAATTCTTGAAATCAG CCAGCCGATTATAGCTCCAGGGATTTTAACAGCTCCGGCCCCAACACCGTCAAGTGTGAACATTACGGCGTTACTCGAAAAGGCTGGATGCAAAACATTT GCGAGTTTGTTACAAACTAGCGGTGTCATTAAAACGTATCAGTCAGCGGCGGATAAAGGTTTAACTATTTTTGCTCCAAACGACGAGGCGTTCAAGGCTG CTGGAGTACCTGATCTGAGCAAGCTCACCAATGCTGAAATAGTCTCGCTCTTACAGTACCATGCCACGGCTACTTACAGTCCGTTTGGGAGTTTGAAAAC TAGCAAAGACCCGATCTCTACGTTGGCTAGTAACGGTGCAGGTAAGTTCGATCTGACGGTTACAAGTGCGGGTGACTCGGTGACTCTACACACTGGAATC GGTCCGTCGCGAGTTGCTGAAACGGTCCTTGACTCAACACCGCTAGTGATTTTCACTGTTGATAATGTGCTGCTACCGGTTGAGTTGTTCGGGAAAGCTC CGTCTCCAGCCCCGGCAGGGGAACCGGTGAGTGCACCGAGTCCGAGTCCGGTTGCATCGAGTCCAGCTCCGGCTAGTGTTGAGGCTCCATCTCCTCTCGC TGCTTCACCCCCTGCTCCGCCTGTGGAGACGCCTGGTGGTGCCCCAGCTGAGACGCCGTTTGGATCCGAGAATAGCACGGCGGATGGTAGTGCTGCTGTT CACGTGAGTGTACCTGTTCAGGTCACTGTCTTTGCCACTGTAATTTGTTCGATTCTCATGTCCTGA
AA sequence Show only first row Show all	>Potri.014G071700.1 pacid=42762469 polypeptide=Potri.014G071700.1.p locus=Potri.014G071700 ID=Potri.014G071700.1.v4.1 annot-version=v4.1 MATLQYSLLLSFTLSALVSTILAHNITDILSGFPEYSEFNKYLTQTKLADEINTRQTITVLALNNGAMTALAAKHPLSVIKNALSLLVVLDYYDPTKLHQ ISKGTTLSTTLYQTTGNAPGNLGFVNITDLQGGKVGFGSAAPGSKLDSSYTKSVKQVPYNISILEISQPIIAPGILTAPAPTPSSVNITALLEKAGCKTF ASLLQTSGVIKTYQSAADKGLTIFAPNDEAFKAAGVPDLSKLTNAEIVSLLQYHATATYSPFGSLKTSKDPISTLASNGAGKFDLTVTSAGDSVTLHTGI GPSRVAETVLDSTPLVIFTVDNVLLPVELFGKAPSPAPAGEPVSAPSPSPVASSPAPASVEAPSPLAASPPAPPVETPGGAPAETPFGSENSTADGSAAV HVSVPVQVTVFATVICSILMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Potri.014G071700 [exp]	0	1	Pt-FLA8.1
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	1.41	0.9558	Pt-ACT2.4
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.011G094400 [exp]	2.23	0.9423
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	3.16	0.9498	Pt-SKU5.1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.014G094800 [exp]	5.47	0.9422	AGP20.1
					Potri.006G055800 [exp]	7.74	0.9398
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	8.30	0.9300
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.007G001000 [exp]	9.05	0.9187
AT2G33400			unknown protein		Potri.010G067300 [exp]	11.09	0.9486
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	11.22	0.9179
					Potri.006G011600 [exp]	13.19	0.9018

Compare expression of checked genes

Potri.014G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.