Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45480 155 / 2e-42 GRF ATGRF9 growth-regulating factor 9 (.1) AT2G36400 122 / 2e-30 GRF ATGRF3 growth-regulating factor 3 (.1) AT4G37740 120 / 2e-29 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G52910 119 / 2e-29 GRF ATGRF4 growth-regulating factor 4 (.1) AT3G13960 109 / 4e-26 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G22840 106 / 1e-24 GRF ATGRF1 growth-regulating factor 1 (.1) AT5G53660 98 / 3e-22 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G06200 95 / 7e-22 GRF ATGRF6 growth-regulating factor 6 (.1) AT4G24150 94 / 3e-20 GRF ATGRF8 growth-regulating factor 8 (.1) AT2G42040 43 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114000 [exp] 139 / 8e-39 AT4G37740 119 / 2e-31 growth-regulating factor 2 (.1) Potri.013G077500 [exp] 126 / 2e-32 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.019G042300 [exp] 125 / 2e-32 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.003G118100 [exp] 119 / 2e-31 AT4G37740 103 / 6e-26 growth-regulating factor 2 (.1) Potri.006G115200 [exp] 118 / 3e-29 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.014G012800 [exp] 119 / 1e-28 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 117 / 5e-28 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.018G065400 [exp] 114 / 6e-28 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.001G169100 [exp] 113 / 7e-28 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020352 [exp] 122 / 4e-31 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10014380 [exp] 119 / 1e-30 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10009533 [exp] 122 / 7e-30 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10033441 [exp] 115 / 5e-28 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1) Lus10000473 [exp] 113 / 4e-27 AT3G13960 187 / 5e-55 growth-regulating factor 5 (.1) Lus10037668 [exp] 107 / 1e-26 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10008916 [exp] 105 / 1e-26 AT4G37740 115 / 2e-30 growth-regulating factor 2 (.1) Lus10011559 [exp] 110 / 7e-26 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10011558 [exp] 109 / 2e-25 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019275 [exp] 109 / 2e-25 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC
Representative CDS sequence Show only first row Show all	>Potri.014G071800.1 pacid=42763937 polypeptide=Potri.014G071800.1.p locus=Potri.014G071800 ID=Potri.014G071800.1.v4.1 annot-version=v4.1 ATGGAGAAAAGAGTATCTGAAGAATCAGCGCCGTCGATGAAACTGTCTCTTGGGATTGGTGCTGGTGATCATGGTGATGATGATCAAGATGATAGACACG TGTTCCCACAGTTAACAGAGACTCAGTTGCATGAGCTTAAACAGCAAGCTTTGATATTCAAGTACATAGTAGCTGGTCTTCGCGTGCCTCCTGATCTTGT AGTTCCCATTTGGCATAGTGTTGCTAGCAGCTCTCTTGGTTCATTTAGTGGTGCTGATATTTATAGGCAATTCCCAAGCTTTGTGGGATTAAGTCCTCAG GGATTTGATTATAGACAAATGATGGATCCAGAACCTGGGAGATGTAGAAGAACTGATGGGAAGAAATGGAGGTGTAGCAAGGATGTAGTTGCTGGTCAGA AGTATTGTGAACGCCATATGCATAGAGGCCGTCAACGTTCAAGAAAGCTTGTGGAAGCTTCTCAAACTGCTGCTGCTTCTGAAAAACCATCACCTCACAA TTCAAGCAAGAATTCAGACAATCCAACCACTCATTCTTCTAATTTAGCCAAAGTAAGTTCACAGATAAAAGCCCCACCTCTTAATAATACCCCCACCATT TTAACCACTTGCACCACAAGTTGCAATTCTGACATTGAAATCACTGGCATGAGCTTGGCCACTACTGCTAATTCTGACTGCAAAAACCCCTTTACAACCA TGACTACTAGCATTGTTACCGGCTACAAGAACACTGCAACAATGATCGCTAGTGCTGTTCATGCTGACATTACAGCCACTGGTAACGACTACAAGAGTAG CATCAACTTAAAGAGACACTACATTGATGACAGAAACAGTAATTGCAGCAACTCTGTTACTTACAAGGGTATAATCGACAGAAACTGCAGCAACAAAAAA ATAAAAAATGCTGGTAGCAATGTATCTCAAGGATTGAACTTCTCCCCGAAGAGTGTTCTTCAAGTTCAAGGTTGCGGCGCCTCACACATTTACATGAATG ATGTGGAACTTGAACTGGGAAGGTGTAGAAGAACAGATGGAAAGAAGTGGCGATGCCGCAGGGATGTTGTAGCTAATCAGAAGTATTGCGAGATGCACAT GCACCGAGGTTCTAAGCAGCACTTGGAAGCGTCCAAACCTGCTGCAATTCCCGCTACAATCCCATTTGTCCCTGGGAATGTTCATTCATATCCTGCAACG AACTTGCCAAGTAAAGCAGATCGCAGAAGCTTAAACACCGATCTCTGTATTTCGATCCCAACAAGTCCTCAACTGATCATGACCAATGATGATACAAGAA CTATCAGCAATAGCAGTGACACTACCATAAGCGACACCATGGTTGGTACCTATCAAAACAAAAACCTTTCTTCTTAG
AA sequence Show only first row Show all	>Potri.014G071800.1 pacid=42763937 polypeptide=Potri.014G071800.1.p locus=Potri.014G071800 ID=Potri.014G071800.1.v4.1 annot-version=v4.1 MEKRVSEESAPSMKLSLGIGAGDHGDDDQDDRHVFPQLTETQLHELKQQALIFKYIVAGLRVPPDLVVPIWHSVASSSLGSFSGADIYRQFPSFVGLSPQ GFDYRQMMDPEPGRCRRTDGKKWRCSKDVVAGQKYCERHMHRGRQRSRKLVEASQTAAASEKPSPHNSSKNSDNPTTHSSNLAKVSSQIKAPPLNNTPTI LTTCTTSCNSDIEITGMSLATTANSDCKNPFTTMTTSIVTGYKNTATMIASAVHADITATGNDYKSSINLKRHYIDDRNSNCSNSVTYKGIIDRNCSNKK IKNAGSNVSQGLNFSPKSVLQVQGCGASHIYMNDVELELGRCRRTDGKKWRCRRDVVANQKYCEMHMHRGSKQHLEASKPAAIPATIPFVPGNVHSYPAT NLPSKADRRSLNTDLCISIPTSPQLIMTNDDTRTISNSSDTTISDTMVGTYQNKNLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Potri.014G071800 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.013G077500 [exp]	1.73	0.7316
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Potri.017G094100 [exp]	6.40	0.7880
AT5G13610			Protein of unknown function (D...		Potri.010G216300 [exp]	8.66	0.6687
AT5G42470			unknown protein		Potri.002G021700 [exp]	9.79	0.6687
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G007200 [exp]	11.66	0.7461
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G173400 [exp]	21.81	0.7155
AT5G39080			HXXXD-type acyl-transferase fa...		Potri.001G395300 [exp]	22.36	0.6986
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	23.32	0.6889
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.001G255400 [exp]	28.56	0.7167
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	40.91	0.6882

Compare expression of checked genes

Potri.014G071800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.