Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP704.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 706 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 673 / 0 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 394 / 2e-132 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT5G23190 343 / 3e-112 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT3G56630 327 / 2e-106 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT5G08250 326 / 3e-106 Cytochrome P450 superfamily protein (.1) AT1G34540 320 / 7e-104 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G63710 301 / 4e-96 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G01600 301 / 6e-96 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 295 / 1e-93 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072100 [exp] 580 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.012G131200 [exp] 575 / 0 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.014G072300 [exp] 573 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.008G088900 [exp] 403 / 1e-135 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 338 / 7e-111 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 329 / 9e-107 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.006G033600 [exp] 327 / 2e-106 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.005G092200 [exp] 327 / 1e-105 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.004G185300 [exp] 322 / 9e-105 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009232 [exp] 727 / 0 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 609 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 607 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 555 / 0 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 402 / 2e-135 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 401 / 8e-135 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 313 / 2e-100 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 307 / 4e-98 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 293 / 1e-92 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 291 / 1e-91 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G072000.1 pacid=42764478 polypeptide=Potri.014G072000.1.p locus=Potri.014G072000 ID=Potri.014G072000.1.v4.1 annot-version=v4.1 ATGGGCATTCTCTTCACCATCTTCACCGTCACCGCAGCAGGACTTCTCTTTATCATTATAAGCTTCTTGTATCTCACATTTCAAACCTACTCAGGAAAAT CCATCAAGAACCCCAACTATCCACCAGTAAATGGCACGGTATTTGGCCAGCTCTTCTACTTCAACAGGCTCTATGACCACCAAACTGAAGTTGCCAGGAA ACAGAAGACTTTCCGGCTTCTTGCTCCAGGCCAGAGTGAATTGTACACAACTGACATAAGGAACATAGAGCATGTATTAAAAACAAAATTTGATAAGTAT ACAAAAGGTAAGTATAATCAAGATATTGCAACTGATCTTTTTGGTAAAGGTATATTTGCTGTTGATGGAGACAAGTGGAGGCAGCAGAGGAAGCTTGCTA GCTTTGAGTTCTCGACGAGAGTTCTTAGAGATTTTAGCTGCTCTGTGTTCAGAAGAAATGCTGCTAAACTTGTCAGAGTTGTCTCCGAGATGGCTATTGC TGATCAGATTTTCGATATGCAAGATACACTGATGAGATGCACTTTGGATTCTATATTCAAAGTTGGGTTCGGAGTGGAACTGAATTGCTTGGAGGGGTCA AACAAAGAGGGAATCGAATTTATGAAGGCCTTCGATGATTCAAATGCCTTGGTCTATCGGCGCTATGTAGATCCACTGTGGAAACTGAAAAGGTACTTCA ACATTTGCTCTGAAGCTTCCCTTAAGAAGAACATCAAAATCATTGATGATTTCGTGACCAACCTGATCGGAACAAAGAGAAAACTACAAGCCGAGGAACG ACTTTATAACGACAAGGAGGATATACTGTCAAGGTTTTTGGTGGAGAGCAAGAAAGACGCCGAGGAAATGAATGATAAGTATCTGAGGGATATAATTCTG AATTTTATGATTGCTGGCAAAGATACCAGTGCAAATACCCTGTCATGGTTCTTCTATATGCTTTGCAAGAACCCGCTAATCCAGGAAAAAGTCGCGCAAG AAGTGAGAGATGTCACAAGCAGTCAAGATGATGTGGTTAATGTTGAAGAGTTCATTGCAAACATAACAGACACAACACTCGAGCAAATGCATTATCTTCA CGCAGCGTTGACAGAGACCTTGAGGTTATACCCTGCTGTTCCTGTGGACGGGAGGTGTGCAGAAGTGGATGACATTCTTCCTGATGGCTTTAGAATGAAA AAGGGTGACGGACTATACTACATGGCATATGCCATGGGTAGGATGCCTTACATTTGGGGAGACGATGCCGAGGATTTTCGGCCAGAAAGATGGCTCAACA ATGGGATTTTCCAACCTGAATCACCATTCAAGTTCATAGCATTTCATGCAGGTCCTCGGATATGTCTGGGCAAAGACTTCGCGTACCGGCAGATGAAGAT ACTATCAATAGCCCTTCTTCGGTTCTTCCGCTTCAAATTAGCTGACGACACAAGAAAAATAACTTACAGGACAATGTTCACACTTCACATTGAAGGAAGT CTGCATCTTCGTGCTATTGGAAGGACCAAGTCATGA
AA sequence Show only first row Show all	>Potri.014G072000.1 pacid=42764478 polypeptide=Potri.014G072000.1.p locus=Potri.014G072000 ID=Potri.014G072000.1.v4.1 annot-version=v4.1 MGILFTIFTVTAAGLLFIIISFLYLTFQTYSGKSIKNPNYPPVNGTVFGQLFYFNRLYDHQTEVARKQKTFRLLAPGQSELYTTDIRNIEHVLKTKFDKY TKGKYNQDIATDLFGKGIFAVDGDKWRQQRKLASFEFSTRVLRDFSCSVFRRNAAKLVRVVSEMAIADQIFDMQDTLMRCTLDSIFKVGFGVELNCLEGS NKEGIEFMKAFDDSNALVYRRYVDPLWKLKRYFNICSEASLKKNIKIIDDFVTNLIGTKRKLQAEERLYNDKEDILSRFLVESKKDAEEMNDKYLRDIIL NFMIAGKDTSANTLSWFFYMLCKNPLIQEKVAQEVRDVTSSQDDVVNVEEFIANITDTTLEQMHYLHAALTETLRLYPAVPVDGRCAEVDDILPDGFRMK KGDGLYYMAYAMGRMPYIWGDDAEDFRPERWLNNGIFQPESPFKFIAFHAGPRICLGKDFAYRQMKILSIALLRFFRFKLADDTRKITYRTMFTLHIEGS LHLRAIGRTKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	0	1	Pt-CYP704.1
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	1.73	0.9423
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	4.89	0.9210
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	7.74	0.9134
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038300 [exp]	8.48	0.9052
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	10.81	0.9049
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	13.74	0.9115
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	13.85	0.9292	PLCYC4.2
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	15.87	0.9123
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	15.87	0.9134
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.001G334700 [exp]	19.74	0.8974

Compare expression of checked genes

Potri.014G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.