Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45510 563 / 0 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 536 / 0 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G69500 438 / 9e-150 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT3G56630 342 / 3e-112 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 337 / 2e-110 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT5G23190 332 / 7e-108 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 319 / 1e-103 Cytochrome P450 superfamily protein (.1) AT4G00360 310 / 2e-99 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 306 / 5e-98 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 304 / 2e-97 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G072100 [exp] 946 / 0 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072000 [exp] 572 / 0 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.012G131200 [exp] 560 / 0 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.008G088900 [exp] 439 / 7e-150 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 369 / 9e-123 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.006G033600 [exp] 353 / 7e-117 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.007G072100 [exp] 329 / 9e-107 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 327 / 2e-105 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.010G050100 [exp] 314 / 4e-101 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037999 [exp] 779 / 0 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 646 / 0 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 575 / 0 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10038896 [exp] 566 / 0 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037157 [exp] 436 / 8e-149 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 433 / 2e-147 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 335 / 8e-109 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 332 / 9e-108 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 318 / 9e-103 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 316 / 3e-102 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.014G072300.5 pacid=42763960 polypeptide=Potri.014G072300.5.p locus=Potri.014G072300 ID=Potri.014G072300.5.v4.1 annot-version=v4.1 ATGGCCTCCATTGATGTTCTTTCAAATCCACTCAAATTCTCAGCTTTAGTTCTAATCCTATCTATATTCATAGTCCAACTCTTCCTTAGAAAGTTGAACA AAAAGCAGAAAAAATACAAGTACCATCCAGTTGCAGGCACGGTGTTTACCCAACTTCTCCACTTCAACAGGGTGCATCATTACATGACTAACCTTGCTGG GAAATATAAGACTTACAGGCTGCGCGCCCCTTTCAGAAGTGAGATTTACACTGTTGACCCTGTAAATGTTGAGTACATACTCAAAACCAACTTTGAAAAT TATGGCAAGGGGGACCATAATTACGACAATTTAAGTGGGTTACTAGGTGATGGAATTTTCACTGTTGATGGTCACAAATGGCGCCAACAAAGAAAGGTTT CGAGCTATGAGTTCTCCACAAAGGTCTTGAGGGACTTCAGCAGTGTGATCTTTAGGAAGAATGTGGCAAAACTTGCTAATATAGTGTCTGAAGCTGCAAA ATCTAACCAGTCAATGGACATACAGGATCTGTTTATGAAATCAACCTTAGATTCGATATTCAAAGTTGGATTTGGGGTTGAGCTAGACAGCATGTGTGGA TCAAATGAAGAAGGTGTCAAATTTACCAGTGCTTTTGATGATGCAAGTGCATTGACCCTTTGGCGATATGTTGATGTGTTCTGGAAAATCAAGAGGTTTT TGAATATTGGATCGGAAGCTGCATTGAAGAAAAACGTCAAAGTGGTTAATGATTTTGTGTATAAACTAATCAATAAAAAAATTGAGCTAATGCGTAACTC AAAAGAAGTTTCTTCTTTAAAGAAAGATGACATTTTATCAAGGTTCCTGCAAGTGACTGAGAATGATCCAACATACTTACGGGACATAATTCTCAATTTT GTGATTGCTGGAAAAGACACAACAGCAACTGCTCTATCATGGTTCATCTACATGTTGTGCAAGCATCCAGCTGTGCAGAATAAGATTGCACAAGAAGTAA GAGAAGCAACTAAAGTGAAAGAGAATACAGACTTTGCAGAATTTGCAGCCAGTATTAATGAAGAAGCTCTAGAAAAGATGAACTATCTCCATGCAGCAAT TTCTGAAACTCTTAGACTGTATCCATCTGTGCCTGTGGATGGGAAGATTTGCTTTTCTGATGACACTCTACCAGATGGCTTTAACGTGAGTAAGGGAGAT ATGGTGGCTTACCAACCTTATGCAATGGGCAGGATGAAGTTCATATGGGGCGATGATGCTGAGGAATACAAACCTGAAAGATGGCTCAAGGATGGCGTGT TTCAGCAAGAAAGCCCTTTCAAGTTTACAGCTTTCCAGGCAGGGCCACGGATATGTCTTGGGAAGGAATTTGCTTATAGGCAGATGAAGATCTTTGCGGC TGTCTTGGTGGCCAGTTTCACTTTTAAACTCGCCGATGAAAAGAAACCAGTCAATTACAGGACGATGATTAATCTTCATGTTGATGGAGGCCTCCATGTT TTTGCCCTCCACAGAAACAGTACTTAG
AA sequence Show only first row Show all	>Potri.014G072300.5 pacid=42763960 polypeptide=Potri.014G072300.5.p locus=Potri.014G072300 ID=Potri.014G072300.5.v4.1 annot-version=v4.1 MASIDVLSNPLKFSALVLILSIFIVQLFLRKLNKKQKKYKYHPVAGTVFTQLLHFNRVHHYMTNLAGKYKTYRLRAPFRSEIYTVDPVNVEYILKTNFEN YGKGDHNYDNLSGLLGDGIFTVDGHKWRQQRKVSSYEFSTKVLRDFSSVIFRKNVAKLANIVSEAAKSNQSMDIQDLFMKSTLDSIFKVGFGVELDSMCG SNEEGVKFTSAFDDASALTLWRYVDVFWKIKRFLNIGSEAALKKNVKVVNDFVYKLINKKIELMRNSKEVSSLKKDDILSRFLQVTENDPTYLRDIILNF VIAGKDTTATALSWFIYMLCKHPAVQNKIAQEVREATKVKENTDFAEFAASINEEALEKMNYLHAAISETLRLYPSVPVDGKICFSDDTLPDGFNVSKGD MVAYQPYAMGRMKFIWGDDAEEYKPERWLKDGVFQQESPFKFTAFQAGPRICLGKEFAYRQMKIFAAVLVASFTFKLADEKKPVNYRTMINLHVDGGLHV FALHRNST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	1.00	0.9046
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	2.82	0.8534
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	2.82	0.8738
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	3.87	0.8902
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.009G096700 [exp]	5.29	0.8584
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	5.65	0.8435	CRK1.2
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G023200 [exp]	6.16	0.8156
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	6.32	0.8384
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	7.34	0.8905
AT3G14760			unknown protein		Potri.011G103500 [exp]	8.12	0.8640

Compare expression of checked genes

Potri.014G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.