Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45540 3647 / 0 WD-40 repeat family protein / beige-related (.1.2) AT3G60920 1506 / 0 unknown protein AT1G58230 401 / 5e-112 binding (.1) AT1G03060 349 / 6e-96 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 342 / 1e-93 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT5G18525 102 / 3e-21 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150000 [exp] 4811 / 0 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 397 / 1e-110 AT1G58230 3474 / 0.0 binding (.1) Potri.005G215400 [exp] 345 / 2e-94 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G047700 [exp] 343 / 4e-94 AT1G03060 5063 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.010G153300 [exp] 101 / 7e-21 AT5G18525 1878 / 0.0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015857 [exp] 2610 / 0 AT2G45540 2610 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10009305 [exp] 1982 / 0 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10009307 [exp] 1464 / 0 AT2G45540 1420 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10015858 [exp] 1238 / 0 AT2G45540 1209 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10042866 [exp] 397 / 8e-111 AT1G58230 2871 / 0.0 binding (.1) Lus10028167 [exp] 379 / 5e-105 AT1G58230 3404 / 0.0 binding (.1) Lus10018744 [exp] 345 / 1e-95 AT1G03060 2581 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10024828 [exp] 335 / 2e-91 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10009306 [exp] 113 / 4e-28 AT3G60920 141 / 3e-39 unknown protein Lus10023903 [exp] 47 / 0.0004 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF02138 [poplar] [flax] Beach Beige/BEACH domain CL0266 [poplar] [flax] PH PF14844 [poplar] [flax] PH_BEACH PH domain associated with Beige/BEACH
Representative CDS sequence Show only first row Show all	>Potri.014G072600.2 pacid=42763420 polypeptide=Potri.014G072600.2.p locus=Potri.014G072600 ID=Potri.014G072600.2.v4.1 annot-version=v4.1 ATGGAAGAAGAAGAAGAAAAGGAGTTCGGACAAAGTCTTAATATTCGGGAAGTAGATAGTGCTGTAAAAGAAGATAGTGTAGGAGAATCTCGTCAAGGGA ATGTAAATGTGCTTAGTGGTGGTCAAGAGGAGATAGAACATGAAAATCCGGTTTATGACAGGCTTGATTCTGTAGATATTGAGGATGATGATGATGATCA GTTTGAACTTGTGTCTTTAAAAGAACAAGAAAGGGGTCTTGGTGAGTTTGCGGTTGGTAATATTGATTCAAACCAACCATCGGATTCAGAGAGTGAGAGA TTCTCGTTTGATAGGTTTGGAGAAGTCTCTTCGAATTCATACAGTAATTATGGTGCTGAATGTGATTCTTCTCCTACCATGGAGATTCAACATGATCGCT CTGTATTGAGCACTGGGCCTGAGAGACAATCTGGTCATGCAATTAAGCAGTCACACTCGTCAACCAGTCTAGATTCTGGTTTCTTTATGGATGGATTCTC TCCAACCAGTTCACCGCAAAAGGCTAAGCCAAAAGCTGCAATGCCAAATGTGTCCCCAGAGTTATTGCATCTGGTGGATTCTGCTATAATGGGAAAGCCT GAAATTTTGGACAAGCTGAAGAACATTGTCAGCGGAGTTGAGAGTTTTGGAAGTGGGGAGGAAACTGAGGGCATTGCTTACTTGGTTGTCGATTCCCTTC TGGCTACAATGGGTGGAGTTGAAAGCTTTGAGGATGAGGATCATAACCCTCCTAGTGTGATGCTGAACTCCCGGGCAGCCATTGTGGCAGCTGAGCTTAT TCCTTGCCTTCCTTGGGTAGGTGACAGTGAGATTTTCATGTCCCCTAGGACACGAATGGTTAGGGGGTTGCTCGCTATATTGCGGGCTTGCACAAGGAAC AGAGCTATGTGTTCTATGGCTGGTTTGTTGGGAGTACTTTTGGGGACAGCAGAGAAAATATTTGTTCAAGCTGGTGGGTTAACAGAACAGATGGGATGGG ATGGGACTCCTTTATGCTACTGTATCCAATACTTAGCGGGGCATTCACTTAATGTTGTTGATTTGCATAGATGGTTACAAGTAATTACGAGAACGCTTAC TACTTCATGGGCATCTCGCTTAATGCTAGCGTTGGAGAAGGCAATTGGTGGAAAGGAGTCAAAGGGACCAGCATCTACTTTTGAGTTTGATGGTGAAAGC TCAGGTTTACTTGGTCCAGGAGAGAGTCGCTGGCCATTTACCAATGGATTTGCTTTTGCAACATGGATCTATATTGAATCATTTGCAGACACGTTGAACA CAGCTACTGTTGCGGCTGCAATTGCTGCTGCTGCAGCAGCCAAGTCAGGAAAATCATCTGCCATGTCAGCTGCAGCTGCTGCCAGTGCACTTGCTGGTGA AGGGACAGCCCACATGCCTAGATTGTTCAGTTTCTTATCTGCTGACAACCAGGGCATAGAGGCTTACTTTCATGCTCAGTTTTTGGTTGTTGAAAGTGGC AGTGGAAAGGGAAAGAAGGCATCTTTACATTTCACTCATGCATTCAAGCCACAATGCTGGTACTTTATTGGTTTGGAGCATATTTGCAAGCAGGGACTTA TTGGGAAAACAGAGAGTGAACTCAGATTGTACATTGATGGATCCTTGTATGAAACTCGTCCTTTTGAGTTCCCTCGAATTTCAAAGCCACTAGCATTTTG CTGCATTGGGACAAACCCTCCTCCTACAATGGCTGGTTTACAGCGTCGTCGTAGGCAGTGTCCTTTGTTTGCTGAGATGGGGCCAGTTTATATCTTTAAG GAGCCAATCGGCCCAGAAAGGATGACACGCTTAGCTTCTAGAGGAGGGGATGTGCTTCCTCATTTTGGTAATGCTGCAGGGCTTCCTTGGCGAGCTACAA ATGACCAAGTTCGAACTATGGCAGAGGAAAGTTCACTTTTGGATGCAGATATTGGAGGGTGCATTCACCTTCTCTATCACCCCAGTTTGCTCAATGGGCG TTTCTGTCCCGATGTTTCTCCTTCTGGTGCTGCAGGTATTCTCCGACGGCCAGCTGAGGTTCTTGGACAAGTCCATGTTGCTACACGAATGCGACCGGTG GAGGCTTTGTGGGCATTGGCTTATGGAGGCCCCATTGCCCTACTTCCTCTATCAGTAAGCAATGTGCATAAAGATAGTCTAGAACCAGTACAAGGAAATC TTCCCATAACCTTGGCCACAGCTACTCTGGCTGCTCCAGTATTCCGGATAATTTCCATAGCTATTCAACACCCTTGGAACAATGAAGAGTTTTGTCGTAC CAGAGGGCCTGAGGTTCTCTCAAAAATCTTAAATTATCTTCTCCAAACTTTGTCCTCATTGGATGCTGGGAATCACAATGGAGTTGGAGATGAGGAACTT GTTGCTGCCATTGTCTCCTTGTGCCAGTCCCAGAAACATAACCATGCACTCAAAGTGCAGCTTTTCACTTCACTGTTACTGGATCTGAGAATTTGGAGTT TATGCAACTATGGATTGCAAAAGAAGCTACTGTCCTCATTAGCAGACATGGTTTTCTTAGAGTCATTGGTAATGCGAGATGCCAATGCTATTCAGATGCT GCTTGATGGCTGCAGAAGATGTTATTGGACAGTTCGTGAGAAGGATTCTGTGAATGCTTTTTCGTTGAATGAGGCAACACATCCAGTGGGCGAATTGAAT GCGTTGGTTGATGAGCTCTTAGTGATCATAGAACTTCTAATAGGAGTGGCATCTCCTGCGGTGGCTGCAGATGACCTCCGTTGTTTACTTGGGTTCTTGG TTGATTGCCCTCAACCTAATCAGGTTGCCAGAGTTTTGAATCTTATCTACAGGCTAGTCGTGCAGCCAAATACAGCCAGAGCTCACATGTTTGCAGAGTC ATTCATAACATGTGGTGGTATAGAAACCCTTCTTGTTCTGCTTCAGCGAGAAGCAAAAGCTGGTGATCATAGCATTCCAGAATTGGTGGCAAAGAGCGAA GATAGCTTACCAGTTCAAGAAACTGAACTAGATATTGGTAATGGTACTTCAGAAAGAAGTCAGAATGATGAACAGGAAAGGGATTTGACTTCCCAGGACA AAGATTATGAACCTGAATTTTTAGACAGTGGTGGTGGTGGCAGTCCTGTCACCACTTCCCCTGGCATGGAAATTGAAAGGATGTCATCTGTTTCGGAAAA CCCATCTGCTAAGAATTTGGGTGGTATAAACCTTTCTATTAGTGCTGATAATGCAAGGAATAATGTTTACAATGTTGATAGAAGCGATGGCATTGTTGTT GCAATCATTGGGCTAATAGGTGCTCTTGTAACTTCTGGGCATTTCAACTTTGTTTCCCATGCACCCTCTGATACTGCTAGCAACTTTTTTGGTGGTGGCC TGCATGATGGAAGTGGTACAATGTTTGATGATAAAGTTTCTCTACTACTTTTTGCACTACAGAAGGCCTTCAAGGCAGCACCTAATAGGCTTATGACTAC CACTGTGTACACAGCTTTATTGGCAGCCTCGATTAACGCTTCTTCAACAGAGGAAGGGCTAAACTTTTATGATTCTGGACATCGCTTTGAACATTCACAA CTTCTGTTGGTTCTGTTGCGGTCTCTGCCTTACGCATCCAGAGCCTTGCAAAGTCGAGCATTGCAGGATCTTCTGTTTTTGGCTTGCAGTCATCCAGAAA ACCGAAGCAGCCTGACAAAAATGGAGGAATGGCCTGAGTGGCTTCTAGAAATTCTAATCTCTAATTATGAGATGGGTGAAAACAAAAATTCTAACTTGGC AAGCTTGGGAGACATAGAAGACCTCATACACAACTTCTTGATTATAATGTTAGAGCACTCAATGCGCCAGAAGGATGGTTGGAAGGATACTGAAGCTACA ATTCATTGTGCAGAATGGCTTTCTATCATTGGGGGATCCAGCACAGGAGACCAACGGGTTAGACGTGAAGAATCACTACCTTTATTTAAAAGAAGGCTCT TGGGTGCGTTGCTAGACTTTGCTGCTAGAGAACTGCAGGTTCAGACTCAAGTAATTGCTGCGGCTGCTGCTGGTGTTGCAGCTGGGGGTTTGCCACCCAA AGATGCTAAGGTGGAAGCAGAAAATGCTGCTCAGCTTTCTGTGGCACTGGTTGAAAATGCTATTGTTATTTTAATGCTTGTTGAAGATCACTTGCGATTA CAAAGCAAACTTTCTAGTGCATCAAGCGTTGTTGACAGTTCATCACCTCCACTTTCTCTTGTATCTCCCCTGAATAATCACTCTAGTTCCCCAGCATCAA TTGGTACTGATTCACTTGAAGCTTTGGGTGATCGCAGATCTAGTGACTCTGGGGGACTCCCTCTTGATGTCCTTGCTTCAATGGCTGATGCAAATGGGCA AATTTCTGCGAGTGTGATGGAACGTCTTACCGCAGCAGCAGCAGCTGAGCCTTTTGAATCTGTTTCATGTGCTTTTGTGTCATATGGGAGCTGTACAATG GATTTAGCTGAGGGTTGGAAATTTAGGAGCAGACTATGGTATGGTGTCGGCCTGCCTTCAAAAACAGCTCCCTTTGGTGGTGGTGGCAGTGGATGGAAAT CTTGGAGGTCTACTTTAGAAAAAGATGCAAACGGAAACTGGATTGAACTTCCTTTGGTAAAAAAATCAGTTGCCATGCTTCAAGCTCTATTATTAGATGA GTCTGGACTTGGTGGTGGTCTTGGTATAGGTGGAGGATCTGGTACTGGAATGGGTGGAATGGCAGCACTATATCAATTATTGGACAGCGACCAACCATTT CTATGCATCCTCCGTATGGTGCTTCTTTCTATGAGAGAGGAGGACAATGGGGAAACCAGTATGCTCATGAGGAATGTAAGCATGGAGGATGGGATGTCGG AAGGATTTGTCCGACAAGCTGGCAACACCATCTCTTTAGAAAACAGTGCTCAAATGCAAATGAGACAACCACGGTCAGCTTTGCTGTGGAGTGTGCTTTC ACCTGTTCTGAACATGCCAATTTCCGATTCAAAAAGACAGAGAGTGTTGGTTGCGTCTTGTATTCTTTACTCTGAGGTATGGCATGCTGTTGGCAGAGAG AGGAAACCCCTTCGTAAACAGTACCTTGAGGGTATCTTACCTCCATTTGTTGCTATGTTGAGGAGGTGGCGGCCTCTTCTAGCTGGAATTCATGAGCTTG CAACTGCTGATGGTCTAAATCCTCTTGTTGTTGATGATCGCGCTTTAGCTGCTGATGCGCTACCAATAGAGGCTGCACTCTGCATGATTTCTCCTGCTTG GGCAGCTGCTTTTGCATCACCACCAGCTGCGATGGCATTGGCGATGATTGCTGCTGGTGCTGCAGGTGGGGAAACCCCTGCTCCTGCAACAACCACACAT CTTAAGCGTGACTCTTCCTTGCTGGAGCGAAAAACTGATAGACTACATACTTTTTCAAGCTTTCAAAAGTCTTTGGAGGTGCCTAACAAAACACCAGCTC ATCATAAGGATAAGGCTGGTGCAAAAGCCGCTGCCTTGGCAGCTGCACGTGATCTTCAACGCAATGCTAAGATTGGTTCTGGACGGGGTCTTAGTGCTGT TGCGATGGCCACATCTGCACAGCGAAGAAATGCTAATGATATGGAGCGTGTTAGGAGATGGAATACTGATGAAGCCATGGGAGTTGCATGGATGGAATGC TTACAACCAGCTGACACACGATCAGTCTATGGGAAAGATCTCAATGCTCTATCCTATAAATTTATCGCAGTCCTTGTTGCAAGCTTTGCCTTAGCAAGAA ACATGCAGCGATTAGAGGTGGACAGGCGTGCTCAAGTTGATGTGATATCTTGTCATCATTTATCCAGTGGAATCCGTGCTTGGCGCAAACTTATACATTG CCTGATAGAGATGAAGAGTCTTTTTGGGCCCTTTGGGGACCCCTTGTGCAATCCTGAGCGTGTTTTCTGGAAGCTAGATTTTATGGAAACTTCTTCAAGA ATGAGAAGATGTTTGAGGAGGAATTATAGAGGATCTAATCATTTTGGTGCTGCTGCTAACTATGAGGATCAAATTGAGCTGAAGCATGATAAAGGAAATG TTCCTGTTCTGGCAGCAGAAGCAATATCAGTGGAAATACTAAATGAAGATGGGGAACATGCAGAAATTGAGAATTTAGGTGTTAGATCCTTTGATACAGA GCAGGGTGGGGAGAGTCAGCTGAGACTGTCTGGAGCAACTGATCAAAGTATGCAGCCTCCAGCAGAATCTAGTGACACTCAACTAGCCAGGGACCAAGAT TTGGAAAATGCATCGGCAGTTACACCAGGTTATGTGCCCAGTGAACGTGATGAAAGAATCATTCTTGAACTTCCATCATCTATGGTCCGGCCACTGACAG TTATGCGAGGAACATTTCAAGTAACTACTAGGAGAATAAACTTTATAGTTGATACCACTGAGAGCAATGCTGATGGAATGAAATCTTCTGAATCGGGAGT CCAAGAAAAGGATCACAGTTGGCTGATGTCTTCCCTCCATCAGATTTATAGCCGGAGGTATTTGCTAAGAAGAAGTGCTCTGGAGTTGTTTATGGTTGAC CGATCAAATTTCTTCTTTGATTTTGGGAGTACTGAGGCACGAAGAAATGCTTACCAAGCTGTAGTTCAATCAAGACCTCCTCATTTGAATAATATTTATC TGGCTACTCAGAGACCTGAACAACTTTTGAAAAGAACTCAACTTATGGAACGTTGGGCAAGGTGGGAGATTAGCAACTTCGAGTATCTAATGCAGCTCAA TACTCTGGCTGGGCGTAGTTATAATGACATCACTCAGTATCCAGTTTTCCCATGGGTTCTTTCTGATTACAGTTCAAAAAGTTTGGATCTTTCTGATGCT TCTTCTTATCGAGATCTTTCAAAGCCTCTTGGTGCTTTAAATCCTGATCGGCTGAAAAAGTTCCAAGAGAGATATTCTAGCTTTGATGATCCAGTCATTC CAAAATTCCATTATGGTTCTCATTACTCAAGTGCAGGGACTGTTTTGTATTATCTTGCTAGAGTTGAACCGTTTACAACACTTTCAATTGAACTTCAAGG TGGAAAATTTGATCATGCAGATCGGATGTTTTCAGATATTGCTGCGACCTGGAAAGGAGTTACTGAAGACATGAGTGATGTGAAGGAATTGGTTCCTGAG CTCTTTTATCTTCCTGAGATCTTAACCAATGAAAATTCAATTGACTTTGGTACGACACAGTTGGGTGGAAAGCTCGATTCTGTCAAACTTCCTCCTTGGG CTGAAAATACTACTGATTTTATCCATAAGCATCAGATGGCTCTTGAGAGTGAGCACGCGTCTACACATTTGCATGAATGGATTGATCTTGTATTTGGCTA TAAGCAACGTGGTAAAGAAGCTATAGCAGCAAACAATGTTTTCTTTTACATCACCTATGAAGGGGCGGTTGATATTGACAAGATCATTGACCCAGTACAA CAACGTGCCACACAAGACCAGATTGCTTACTTTGGACAGACTCCATCCCAACTTTTGACTGTTCCTCACTTGAAGCGAATGCCCTTATCAGATGTTCTTC ACTTACAGACTATTTTCAGGAACCCAAAAGAAGTCAGGCCATATGCCGTTCTGGCCCCAGAACGCTGCAATCTACCTGCAGCTTCCATTCATGCATCTTC AGACGCTGTTATAATTGTTGATATAAATGCACCAGCAGCGCACATTGCCCAGCACAAGTGGCAACCCAACACACCAGATGGCCATGGTGCACCTTTTCTC TTTCAACATGGAAAGGCCTTAACAAGCTCTGCTGGTGGAACATTCATGCGAATTTTTAAAGGGCAATCCAGATCTGTTGGGGATGATTGGCATTTTCCCC AAGCACTAGCATTTGCTTCATCTGGAATTAGAGGCAAAGCGGTGGTTTCCATCACTCATGACAAAGAAATCATTACTGGTGGGCATGCAGATAACAGTAT CAAGCTATTATCAGCAGATGGTGCAAAAACCCTAGAAACTGCAGTTGCGCATTGTGCTCCAGTTACTTGCCTTGCTCTTTCACCAGATAGCAACTATCTC GTCACAGGATCACGGGACACTACTGTCTTACTCTGGAAGATACACAGGGCATTCACTTCAAGCTCAAGCAGCATGTCAGAGCCTTCCAAGGTCACAGACA CAGGCACACCACCTGCATCCAGTAGCACTACAGCAACTAACCTGGCAGAAAAAAGCAGGAGGTGTCGCATTGAGGGTCCCATACATGTTCTACGTGGTCA CCACAGAGAAATAATGTGTTGTTGTGTCAATTCAGATCTTGGGATTGTTGTTTCTTGCTCCCAATCATCAGATGTTCTGTTGCATTCTATAAGAAGGGGC CGTTTGATCAGAAGGCTGGTTGGTGTGGAGGCCCACTCTGTTTGTCTTTCATCCGAGGGGGTTGTGATGACCTGGAACAAATGTCAAAATTCTCTGAACA CCTATACTCTAAACGGGAAACCAATTGCTAGAGCACAACTTCCTTTATCTGGCTGTGTTAGTTGCATTGAAATTTCTGTGGATGGGAAGAGTGCTTTGAT TGGCATGAACTCATATCAGGAAAACGATGAAACCTCTAATAACAACAAAAAAATAAGCTTGAAGAAGCCAGGGGCTGCAGATTTTAATCTGGAATCAGAG GACACTGGTGAACATAACAGATTAGATGTTCCTTCCCCTTCAATTTGTTTCCTGGATCTTTATACATTGAAGGTATTTCATGTTTTGAAACTTGGAGAAG GCCAGGATATTACTGCTCTGGCTTTAAACAATGATAGCACAAATCTCTTGGTATCAACTGCAGATAAACAGTTGATAATCTTCACTGATCCAGCTTTGAG CTTGAAAGTGGTCGATCAGATGCTCAAGCTTGGTTGGGAAGGCGACGGGTTGAGCCCACTTATAAAATCGCAGCGTTTAGGCCATTGA
AA sequence Show only first row Show all	>Potri.014G072600.2 pacid=42763420 polypeptide=Potri.014G072600.2.p locus=Potri.014G072600 ID=Potri.014G072600.2.v4.1 annot-version=v4.1 MEEEEEKEFGQSLNIREVDSAVKEDSVGESRQGNVNVLSGGQEEIEHENPVYDRLDSVDIEDDDDDQFELVSLKEQERGLGEFAVGNIDSNQPSDSESER FSFDRFGEVSSNSYSNYGAECDSSPTMEIQHDRSVLSTGPERQSGHAIKQSHSSTSLDSGFFMDGFSPTSSPQKAKPKAAMPNVSPELLHLVDSAIMGKP EILDKLKNIVSGVESFGSGEETEGIAYLVVDSLLATMGGVESFEDEDHNPPSVMLNSRAAIVAAELIPCLPWVGDSEIFMSPRTRMVRGLLAILRACTRN RAMCSMAGLLGVLLGTAEKIFVQAGGLTEQMGWDGTPLCYCIQYLAGHSLNVVDLHRWLQVITRTLTTSWASRLMLALEKAIGGKESKGPASTFEFDGES SGLLGPGESRWPFTNGFAFATWIYIESFADTLNTATVAAAIAAAAAAKSGKSSAMSAAAAASALAGEGTAHMPRLFSFLSADNQGIEAYFHAQFLVVESG SGKGKKASLHFTHAFKPQCWYFIGLEHICKQGLIGKTESELRLYIDGSLYETRPFEFPRISKPLAFCCIGTNPPPTMAGLQRRRRQCPLFAEMGPVYIFK EPIGPERMTRLASRGGDVLPHFGNAAGLPWRATNDQVRTMAEESSLLDADIGGCIHLLYHPSLLNGRFCPDVSPSGAAGILRRPAEVLGQVHVATRMRPV EALWALAYGGPIALLPLSVSNVHKDSLEPVQGNLPITLATATLAAPVFRIISIAIQHPWNNEEFCRTRGPEVLSKILNYLLQTLSSLDAGNHNGVGDEEL VAAIVSLCQSQKHNHALKVQLFTSLLLDLRIWSLCNYGLQKKLLSSLADMVFLESLVMRDANAIQMLLDGCRRCYWTVREKDSVNAFSLNEATHPVGELN ALVDELLVIIELLIGVASPAVAADDLRCLLGFLVDCPQPNQVARVLNLIYRLVVQPNTARAHMFAESFITCGGIETLLVLLQREAKAGDHSIPELVAKSE DSLPVQETELDIGNGTSERSQNDEQERDLTSQDKDYEPEFLDSGGGGSPVTTSPGMEIERMSSVSENPSAKNLGGINLSISADNARNNVYNVDRSDGIVV AIIGLIGALVTSGHFNFVSHAPSDTASNFFGGGLHDGSGTMFDDKVSLLLFALQKAFKAAPNRLMTTTVYTALLAASINASSTEEGLNFYDSGHRFEHSQ LLLVLLRSLPYASRALQSRALQDLLFLACSHPENRSSLTKMEEWPEWLLEILISNYEMGENKNSNLASLGDIEDLIHNFLIIMLEHSMRQKDGWKDTEAT IHCAEWLSIIGGSSTGDQRVRREESLPLFKRRLLGALLDFAARELQVQTQVIAAAAAGVAAGGLPPKDAKVEAENAAQLSVALVENAIVILMLVEDHLRL QSKLSSASSVVDSSSPPLSLVSPLNNHSSSPASIGTDSLEALGDRRSSDSGGLPLDVLASMADANGQISASVMERLTAAAAAEPFESVSCAFVSYGSCTM DLAEGWKFRSRLWYGVGLPSKTAPFGGGGSGWKSWRSTLEKDANGNWIELPLVKKSVAMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPF LCILRMVLLSMREEDNGETSMLMRNVSMEDGMSEGFVRQAGNTISLENSAQMQMRQPRSALLWSVLSPVLNMPISDSKRQRVLVASCILYSEVWHAVGRE RKPLRKQYLEGILPPFVAMLRRWRPLLAGIHELATADGLNPLVVDDRALAADALPIEAALCMISPAWAAAFASPPAAMALAMIAAGAAGGETPAPATTTH LKRDSSLLERKTDRLHTFSSFQKSLEVPNKTPAHHKDKAGAKAAALAAARDLQRNAKIGSGRGLSAVAMATSAQRRNANDMERVRRWNTDEAMGVAWMEC LQPADTRSVYGKDLNALSYKFIAVLVASFALARNMQRLEVDRRAQVDVISCHHLSSGIRAWRKLIHCLIEMKSLFGPFGDPLCNPERVFWKLDFMETSSR MRRCLRRNYRGSNHFGAAANYEDQIELKHDKGNVPVLAAEAISVEILNEDGEHAEIENLGVRSFDTEQGGESQLRLSGATDQSMQPPAESSDTQLARDQD LENASAVTPGYVPSERDERIILELPSSMVRPLTVMRGTFQVTTRRINFIVDTTESNADGMKSSESGVQEKDHSWLMSSLHQIYSRRYLLRRSALELFMVD RSNFFFDFGSTEARRNAYQAVVQSRPPHLNNIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWVLSDYSSKSLDLSDA SSYRDLSKPLGALNPDRLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLARVEPFTTLSIELQGGKFDHADRMFSDIAATWKGVTEDMSDVKELVPE LFYLPEILTNENSIDFGTTQLGGKLDSVKLPPWAENTTDFIHKHQMALESEHASTHLHEWIDLVFGYKQRGKEAIAANNVFFYITYEGAVDIDKIIDPVQ QRATQDQIAYFGQTPSQLLTVPHLKRMPLSDVLHLQTIFRNPKEVRPYAVLAPERCNLPAASIHASSDAVIIVDINAPAAHIAQHKWQPNTPDGHGAPFL FQHGKALTSSAGGTFMRIFKGQSRSVGDDWHFPQALAFASSGIRGKAVVSITHDKEIITGGHADNSIKLLSADGAKTLETAVAHCAPVTCLALSPDSNYL VTGSRDTTVLLWKIHRAFTSSSSSMSEPSKVTDTGTPPASSSTTATNLAEKSRRCRIEGPIHVLRGHHREIMCCCVNSDLGIVVSCSQSSDVLLHSIRRG RLIRRLVGVEAHSVCLSSEGVVMTWNKCQNSLNTYTLNGKPIARAQLPLSGCVSCIEISVDGKSALIGMNSYQENDETSNNNKKISLKKPGAADFNLESE DTGEHNRLDVPSPSICFLDLYTLKVFHVLKLGEGQDITALALNNDSTNLLVSTADKQLIIFTDPALSLKVVDQMLKLGWEGDGLSPLIKSQRLGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45540			WD-40 repeat family protein / ...		Potri.014G072600 [exp]	0	1
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	4.12	0.8614
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	4.89	0.8201
AT5G47490			RGPR-related (.1)		Potri.003G077100 [exp]	7.74	0.7864
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	9.48	0.7778
AT2G27900			unknown protein		Potri.009G002900 [exp]	9.89	0.7669
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	10.24	0.7334
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	10.53	0.7937
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Potri.002G121000 [exp]	11.31	0.7431
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	21.54	0.7589
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	23.32	0.7812

Compare expression of checked genes

Potri.014G072600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.