Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45590 576 / 0 Protein kinase superfamily protein (.1) AT4G25390 440 / 2e-146 Protein kinase superfamily protein (.1.2) AT5G51770 401 / 3e-131 Protein kinase superfamily protein (.1) AT1G80870 168 / 4e-44 Protein kinase superfamily protein (.1) AT1G61860 152 / 3e-40 Protein kinase superfamily protein (.1) AT5G13160 150 / 2e-39 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 147 / 1e-38 Protein kinase superfamily protein (.1) AT5G18610 149 / 2e-38 Protein kinase superfamily protein (.1.2) AT3G58690 147 / 2e-38 Protein kinase superfamily protein (.1) AT5G11020 144 / 2e-37 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150800 [exp] 981 / 0 AT2G45590 563 / 0.0 Protein kinase superfamily protein (.1) Potri.015G134100 [exp] 556 / 0 AT4G25390 536 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G131900 [exp] 541 / 0 AT4G25390 486 / 5e-164 Protein kinase superfamily protein (.1.2) Potri.003G183100 [exp] 283 / 2e-85 AT1G80870 786 / 0.0 Protein kinase superfamily protein (.1) Potri.001G043700 [exp] 163 / 3e-42 AT1G80870 721 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 153 / 8e-40 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 150 / 9e-40 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.004G026200 [exp] 154 / 1e-39 AT4G05200 573 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G421400 [exp] 149 / 3e-39 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041395 [exp] 712 / 0 AT2G45590 647 / 0.0 Protein kinase superfamily protein (.1) Lus10036533 [exp] 510 / 2e-175 AT2G45590 416 / 2e-138 Protein kinase superfamily protein (.1) Lus10027393 [exp] 490 / 8e-166 AT4G25390 555 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026069 [exp] 285 / 2e-86 AT1G80870 646 / 0.0 Protein kinase superfamily protein (.1) Lus10014361 [exp] 274 / 3e-82 AT1G80870 580 / 0.0 Protein kinase superfamily protein (.1) Lus10031678 [exp] 254 / 3e-79 AT2G45590 263 / 6e-83 Protein kinase superfamily protein (.1) Lus10031679 [exp] 218 / 1e-65 AT4G25390 280 / 1e-91 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 157 / 3e-41 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 157 / 3e-41 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 149 / 7e-39 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G072900.1 pacid=42762814 polypeptide=Potri.014G072900.1.p locus=Potri.014G072900 ID=Potri.014G072900.1.v4.1 annot-version=v4.1 ATGCCATCTCGCCACCTCCGATCTCTCTCTCCACCCCCACCCCCACCCCTCCACCACCACCACCACCACCACCACCTCTTAGCTCCGCTCCTTGCTGGAG CACTAACACTCTTTCTAATTTTTATTGTTATACTTGTAATCTTGCTCTATCGCAAAATCACGCGCAACCGTACAGCTCCGATAACTAAATCCCCAAATCA CCACCACCAACAATGCCGCTGCTACTCTTACTCCCTTCTCCGCCGTGCAACCTCCTCATTCTCACCCTCTAACCGCCTCGGCCACGGCGGGTTCGGATCA GTCTACAAAGCTACACTTCCTAACACTAATCAACATTTAGCTGTTAAATTAATGGATCAAAACGGTTCACTTCAAGGCGAGAGAGAGTTCCATAACGAAC TCTCTATTGCTTCTTGCTTGGATTCTCCTAACATTGTTTCTCTCCTTGGTTACTCGTGTTCGCGAAAGAAGAAATTAATTTTAGTCTATGAGTTAATGGA GAATAGGAGCTTACAGGAGGCTTTGTTTGATAGGAAATGTGAAGAGTTAATGAACTGGAAGGTTAGGTTTGATTTAGTTATTGGTGTAGCGAAAGGACTT GAGTATTTGCATCATTCTTGTAACCCTCCCGTGATTCATGGGGACATTAAGCCTAGTAATATCTTGCTTGATTCGTTTTTTAATGCGAAAATTGGGGATT TTGGACTAGCAAGATTGAAGATTGAAGAGAGTAATGGTGTCGTGGAGAAGAAAGAGGGTTTGGGAGAGGAAAATGGGTCGATTTTGGAGGAGACGGAGAG TGTGGGGAGTGTGTGTGGAGAGAGTGGGATTATTGCTGTTGGTGGGGTTGAGAGGTCGCCAGAGAGTTTTGGTGGTAGGGTCTTGGATTCGGATGCGTCA CCGGAGATGGTTTCTCCGGAGGTTGGGGTGGATAAAGGGAGTGTATCGGAGGCGGGGTTTGATAAGATGAGCGTTGATAGTGGGAGAGATTTGATTGGTG GAGGGAAGAAAGGTGGGTCGAGGAGGGATTGGTGGTGGAAACAGGATAATGGAGGTGGATCGGAGTCGGGGAGGGTGAAGGATTATGTGATGGAGTGGAT TGGAAGTGAGATTAATAAGGAGAGGAGACCTAAGCAAGAATGGAATGTTGTGTCTCCAGTTTCGAGTGATAATAAGTTGTTAAGCACGGAAAGTTTGAAG ATTGAGCCAAAGAAGCATAAGAAGCGACTGGAATGGTGGGCTTCTTTGGATGAGGGAAGAATGAAGAAGGAGAAGAATAGGAAGCCTAGAGAGTGGTGGA AGGAAGAGTTTTGTGAGGAGCTTACCAAGAAAAAGAAGAGAGGACTTAGTTCGAGTAATAGTGGAGATTTATGGTGGCAAAAGGATGATGATTTGGTACA AGAGAGGAAGAAGAAGAGGAAGAGTAAGGGCAGTATTGATTGGTGGTTGGATGGGTTTAGTGGTGAATTCAGAAATGGGAGAAGAAATAGCCAGGATTGG GCTAGTGGAGAGATCCCCAAGAGTGGTGGTATTAGCAGCACGCCTAGCATGAGAGGAACGGTGTGTTATATCGCTCCTGAATATGGTGGCGGCGGCCTGT TATCAGAGAAGTGTGATGTCTATAGTTTTGGTGTTCTGCTCCTTGTGGTGGTTTCTGGGAGAAGACCACTGCAAGTAACTGCCTCGCCGATGTCAGAATT TGAGAGGGCTAATCTAATATCCTGGGCTAGGCAACTTGCATACAACGGGAAGCTATTGGATCTTGTCGATCCTTCAATACTTTCATTGGATAAGGATCAG GCATTGCTTTGCATTACAATTGGTCTACTCTGTTTGCAGAGATCGCCTAGCAAACGGCCTACCGTGAAAGAAATTGTGGGGATGCTCTCTGGGGAGGCAG AGCCGCCCCACTTGCCATTTGAGTTCTCTCCGTCACCGCCGTCCAATTTTCCATTTAAGTCTCCAAGGAAGGCCCGGTGA
AA sequence Show only first row Show all	>Potri.014G072900.1 pacid=42762814 polypeptide=Potri.014G072900.1.p locus=Potri.014G072900 ID=Potri.014G072900.1.v4.1 annot-version=v4.1 MPSRHLRSLSPPPPPPLHHHHHHHHLLAPLLAGALTLFLIFIVILVILLYRKITRNRTAPITKSPNHHHQQCRCYSYSLLRRATSSFSPSNRLGHGGFGS VYKATLPNTNQHLAVKLMDQNGSLQGEREFHNELSIASCLDSPNIVSLLGYSCSRKKKLILVYELMENRSLQEALFDRKCEELMNWKVRFDLVIGVAKGL EYLHHSCNPPVIHGDIKPSNILLDSFFNAKIGDFGLARLKIEESNGVVEKKEGLGEENGSILEETESVGSVCGESGIIAVGGVERSPESFGGRVLDSDAS PEMVSPEVGVDKGSVSEAGFDKMSVDSGRDLIGGGKKGGSRRDWWWKQDNGGGSESGRVKDYVMEWIGSEINKERRPKQEWNVVSPVSSDNKLLSTESLK IEPKKHKKRLEWWASLDEGRMKKEKNRKPREWWKEEFCEELTKKKKRGLSSSNSGDLWWQKDDDLVQERKKKRKSKGSIDWWLDGFSGEFRNGRRNSQDW ASGEIPKSGGISSTPSMRGTVCYIAPEYGGGGLLSEKCDVYSFGVLLLVVVSGRRPLQVTASPMSEFERANLISWARQLAYNGKLLDLVDPSILSLDKDQ ALLCITIGLLCLQRSPSKRPTVKEIVGMLSGEAEPPHLPFEFSPSPPSNFPFKSPRKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	3.16	0.8515
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	5.19	0.8770
AT5G52280			Myosin heavy chain-related pro...		Potri.012G141200 [exp]	6.00	0.8170
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	6.24	0.8605
AT3G54630			unknown protein		Potri.001G208700 [exp]	6.63	0.7985
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Potri.007G045300 [exp]	7.00	0.8327
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	9.00	0.8279
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	10.00	0.8256
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.007G022600 [exp]	13.11	0.8542
AT1G05150			Calcium-binding tetratricopept...		Potri.002G027900 [exp]	14.14	0.7945

Compare expression of checked genes

Potri.014G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.