Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45600 352 / 1e-121 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 258 / 9e-85 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 254 / 5e-83 ATCXE20 carboxyesterase 20 (.1) AT5G16080 167 / 7e-49 ATCXE17 carboxyesterase 17 (.1) AT1G68620 157 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 143 / 7e-40 ATCXE18 carboxyesterase 18 (.1) AT1G47480 133 / 2e-36 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 132 / 6e-36 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G27320 121 / 1e-31 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 118 / 7e-31 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466300 [exp] 388 / 1e-135 AT2G45600 328 / 3e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466166 [exp] 387 / 2e-135 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466400 [exp] 384 / 4e-134 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 379 / 6e-132 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G137100 [exp] 276 / 2e-91 AT5G62180 323 / 3e-110 carboxyesterase 20 (.1) Potri.002G150900 [exp] 244 / 8e-79 AT2G45610 320 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073100 [exp] 214 / 8e-69 AT2G45600 175 / 8e-54 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 173 / 3e-51 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.001G459400 [exp] 166 / 2e-48 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009308 [exp] 394 / 4e-138 AT2G45600 340 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 168 / 1e-49 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 160 / 9e-47 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10015989 [exp] 157 / 2e-45 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013774 [exp] 157 / 7e-45 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10033548 [exp] 156 / 1e-44 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10039162 [exp] 154 / 3e-44 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10008439 [exp] 153 / 1e-43 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017587 [exp] 152 / 3e-43 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10015988 [exp] 149 / 4e-42 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF10340 [poplar] [flax] Say1_Mug180 Steryl acetyl hydrolase
Representative CDS sequence Show only first row Show all	>Potri.014G073000.1 pacid=42763195 polypeptide=Potri.014G073000.1.p locus=Potri.014G073000 ID=Potri.014G073000.1.v4.1 annot-version=v4.1 ATGGATCCTTATGAATTCCTTCATCTATCTCCAAACCCAGACGGTTCACTCGCTAGAAATTACCTTTTTCCTTCAGTACCTCCAGTTGAGAAACCCCTCA GTGATCCAAGCAAGCCCCAACTCGCTCTTTCCAAAGACATCCCTCTTAACCCTACCAAGAATACCTTTATTCGCATCTTTCTCCCTTCAAACCAACCACC AAGCACTAAACTTCCTGTCATTCTTTACTTTCATGGAGGTGGTTTTGTTCTTTTTAGCGTTGCTTCTCTTCCTTTCCATCAATCTTGTTGTGCCATGGCT TCGAACTTCCCTGCTTTAATCCTGTCCGTTGAGTATCGTCTTGCACCTGAACATCGCCTCCCTGCAGCGTACGATGATGCAATGGATTCTCTCGCGTGGG TCCGCGACCAAGCAATCAATGGCGACGATCCTTGGTTGAAAGAATACGGAGATCTTTCCAAGTTTTTCTTAATGGGCAGTAGCGCCGGTGGTAACATTGT GTACCATGCTGCTTTACGTGCGCTGGATGCTGATCTTTCGTCTATTAGGATCAAAGGGCTGATAATGAACGTGCCTTATTTTGGTGGGGTCAATAGGACC GAGTCCGAGATTAGATTGAAAGATGATAAGATCTTGCCGATGCCAGCCAACGATCTGCTGTGGTCACTTGCATTGCCTAAAGATGCTGATCGTGACCACG AGTATTGTAACCCCATCGTTGCTGGATCCAATGATGATGGGAAGATCAGACGGCTGCCGATGTGTTATGTTAAAATTTATGGCGGGGACCCCCTTTCGGA CAAGCAGAAGGAGTTCTCGAAGATGCTAGAGTCACTTGGGGTTCACGTGGTGACAAGTTCTGATCCCGATGGCTACCATGCCGTGGAGCTCTTTGATCCT AGAAAAGCTAAAGCTTTCTATGATGAAGTCAAGGAATTTATCAGCACTGCTTCACCCGCCACCAACTCCTCCATGTGA
AA sequence Show only first row Show all	>Potri.014G073000.1 pacid=42763195 polypeptide=Potri.014G073000.1.p locus=Potri.014G073000 ID=Potri.014G073000.1.v4.1 annot-version=v4.1 MDPYEFLHLSPNPDGSLARNYLFPSVPPVEKPLSDPSKPQLALSKDIPLNPTKNTFIRIFLPSNQPPSTKLPVILYFHGGGFVLFSVASLPFHQSCCAMA SNFPALILSVEYRLAPEHRLPAAYDDAMDSLAWVRDQAINGDDPWLKEYGDLSKFFLMGSSAGGNIVYHAALRALDADLSSIRIKGLIMNVPYFGGVNRT ESEIRLKDDKILPMPANDLLWSLALPKDADRDHEYCNPIVAGSNDDGKIRRLPMCYVKIYGGDPLSDKQKEFSKMLESLGVHVVTSSDPDGYHAVELFDP RKAKAFYDEVKEFISTASPATNSSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	0	1
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	2.23	0.9065
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	4.58	0.8909
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	8.00	0.8816
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.012G035200 [exp]	11.61	0.8623
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052300 [exp]	12.84	0.8681
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	14.56	0.8457	LPD1,Pt-LPD.1
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	16.15	0.8615
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	22.75	0.8514
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Potri.007G010900 [exp]	24.12	0.8938
AT3G51470			Protein phosphatase 2C family ...		Potri.007G058700 [exp]	25.03	0.8296

Compare expression of checked genes

Potri.014G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.