Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45600 174 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1) AT2G45610 137 / 5e-39 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 134 / 5e-38 ATCXE20 carboxyesterase 20 (.1) AT3G48700 93 / 2e-22 ATCXE13 carboxyesterase 13 (.1) AT1G19190 89 / 4e-21 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 89 / 6e-21 alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 89 / 8e-21 ATCXE18 carboxyesterase 18 (.1) AT3G48690 89 / 9e-21 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 88 / 2e-20 ATCXE17 carboxyesterase 17 (.1) AT2G03550 86 / 5e-20 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466300 [exp] 322 / 2e-111 AT2G45600 328 / 3e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466400 [exp] 321 / 3e-111 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466166 [exp] 319 / 2e-110 AT2G45600 335 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466200 [exp] 314 / 3e-108 AT2G45600 330 / 1e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G073000 [exp] 191 / 4e-60 AT2G45600 352 / 2e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G137100 [exp] 141 / 1e-40 AT5G62180 323 / 3e-110 carboxyesterase 20 (.1) Potri.002G150900 [exp] 118 / 1e-31 AT2G45610 320 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 103 / 1e-26 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032600 [exp] 101 / 2e-25 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009308 [exp] 193 / 9e-61 AT2G45600 340 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 108 / 5e-28 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 105 / 4e-27 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10015989 [exp] 105 / 5e-27 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042662 [exp] 97 / 6e-24 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10015988 [exp] 97 / 7e-24 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021745 [exp] 96 / 2e-23 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10013774 [exp] 96 / 3e-23 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10021743 [exp] 94 / 1e-22 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10008439 [exp] 93 / 3e-22 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF10340 [poplar] [flax] Say1_Mug180 Steryl acetyl hydrolase
Representative CDS sequence Show only first row Show all	>Potri.014G073100.1 pacid=42763577 polypeptide=Potri.014G073100.1.p locus=Potri.014G073100 ID=Potri.014G073100.1.v4.1 annot-version=v4.1 ATGTCAACTTGCTCTGTTAAGCTAACAGATCTCCTCGATTTTGTGGAGAATCCAGATGGCTCCCTCACCAGAAACAGTCCATTTCCTGAAGTACCGCCGA CAGAACAAACAACTCCAGATTCCAAAGAACTTTCGCTCTCGAAAGACATCCCTCTAAATCCCAACAACAAAACATCCCTTCGTTTATTTCGCCCTTTGAA ACCCCCTCAAAAACTCCCTCTCATTATTTACTATCATGGAGGTGGCTTTGTTCTTTACAGCGCTGCAACTCTTGCTTTCCATCAAACGTGCAGTGACATG GCTTCTCATTTCCCTGCTCTCGTCCTGTCTGTTGACTATCGTCTTGCCCCTGAACATCGCCTTCCTGCTGCATATGAAGATGCTATTGAGGCTATGAAGT GGGTCCAAAACCAAGTTTTGGATATCAACGGCCCTTCTTGTGAACCTTGGCTTAAAGAATACCTTGATTATTCAAGGTGTTTCTTGATGGGCATGAGTGC TGGAGGCAATATTGCTTACCATGCAAACTTGCTTGCCTTGAATATTGATATCAAGCCCTTGGAAATCATTGGGTTGATATTGAATATGCCCTATTTGTTA GGATTGTTGCCATTATGTGCAGCAATCATAGAGCATTTACAGCCTATCTTCTAG
AA sequence Show only first row Show all	>Potri.014G073100.1 pacid=42763577 polypeptide=Potri.014G073100.1.p locus=Potri.014G073100 ID=Potri.014G073100.1.v4.1 annot-version=v4.1 MSTCSVKLTDLLDFVENPDGSLTRNSPFPEVPPTEQTTPDSKELSLSKDIPLNPNNKTSLRLFRPLKPPQKLPLIIYYHGGGFVLYSAATLAFHQTCSDM ASHFPALVLSVDYRLAPEHRLPAAYEDAIEAMKWVQNQVLDINGPSCEPWLKEYLDYSRCFLMGMSAGGNIAYHANLLALNIDIKPLEIIGLILNMPYLL GLLPLCAAIIEHLQPIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073100 [exp]	0	1
AT1G76520			Auxin efflux carrier family pr...		Potri.001G125501 [exp]	5.00	0.8446
					Potri.014G069900 [exp]	7.41	0.8619
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.004G215100 [exp]	14.83	0.8506
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	19.07	0.7805
AT3G06140			RING/U-box superfamily protein...		Potri.005G036400 [exp]	21.90	0.8378
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	22.58	0.8473
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	25.37	0.8462
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G028600 [exp]	33.04	0.8332
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	34.02	0.8417
					Potri.014G063350 [exp]	37.04	0.8284

Compare expression of checked genes

Potri.014G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.