Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45620 576 / 0 Nucleotidyltransferase family protein (.1) AT3G45750 115 / 1e-26 Nucleotidyltransferase family protein (.1.2) AT3G45760 92 / 3e-19 Nucleotidyltransferase family protein (.1.2) AT2G39740 80 / 2e-15 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 75 / 9e-14 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151000 [exp] 951 / 0 AT2G45620 629 / 0.0 Nucleotidyltransferase family protein (.1) Potri.001G400800 [exp] 78 / 7e-15 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1) Potri.010G199500 [exp] 76 / 3e-14 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015854 [exp] 640 / 0 AT2G45620 661 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009309 [exp] 612 / 0 AT2G45620 639 / 0.0 Nucleotidyltransferase family protein (.1) Lus10009310 [exp] 582 / 0 AT2G45620 557 / 0.0 Nucleotidyltransferase family protein (.1) Lus10001012 [exp] 81 / 1e-15 AT2G39740 391 / 6e-132 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10030154 [exp] 78 / 8e-15 AT2G39740 396 / 7e-134 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 66 / 8e-11 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 54 / 3e-07 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain CL0260 [poplar] [flax] PF03828 [poplar] [flax] PAP_assoc Cid1 family poly A polymerase
Representative CDS sequence Show only first row Show all	>Potri.014G073300.2 pacid=42763401 polypeptide=Potri.014G073300.2.p locus=Potri.014G073300 ID=Potri.014G073300.2.v4.1 annot-version=v4.1 ATGGCCAGCGGTGGCGGTGAGGCTCCACCGATTCCGCCGAATGCTAATGGCGGCGAATTTCTACTCTCTCTACTCCAAAGACCTAACCACCATCATCCAC CGCACCAGCAGCAACAATCCCAATTTCCTTCGCAATTCTCTCCTTTTATCACACCACAATTACAAAATCAACATCCTCAGCCTCAGCCTCAGCCTCAGCC TCAGCCTCTCGGTTTTGATCCTGCAGTTGCAGCTGTGGGCCCCAGTTTACCACTACTGCCTCATCAATTGCTGCAATCCAACGGCCGTGATCTTCTCTCA AATACCCCTCCTCTCTGGTCACACAATCTCGGCTTTCCGCAGAAAAACCATGCTTTTCCTCACCCCCACCCCCTTGGAAATCAATTCCAAGGGAATCAAT ATTTAGCAGATGATTTGCAAAGATCAGGGCTTTCAATTGCGGAGGTTAGAGCTAATAACAACAACAATAATAATTTGATTCAGCATCTGCCTCAACAGAA GCAACAGTTAGAGCAAAAGCTACAGTTTGGTTCTTTTTCAAGTGCAATTCCAAGCCCTGCTGACGGTTTAGTCAATGCGAATTTGATGCGAGAAGTAGGA CCAGGGAGCAGAAATTTCAATGGATTGGAAAGGAATCGGCATCTCGAGAAGCAAGCAAACTCGCATTCGACGAATTTTGAAGTGCGACAGCCAGGAGCCA GCAGTGGAGGGCGGGGAAACCTTCACAAGGAGCAGCACCAGAATTACAAGTCTCCGCCTCCGGGGTTTTCGAATAAGCCTAGAGGTGGAGGAGGAGGAGG GAATTGGGATCATGGAGGTAGGAGGAGAGAATTAGAGCATACTATGTATAGGGAAAAGGGAGATTATAGTGAATTGAACAATGAGAAAGCGAGGAGAAAT GAGGGGTCAGTTGAGGTGAGGTTTACGAGACAGCTTGATCGTCCGGGTCCACCTCCTGGGAGTAATCTTCATTCGGTTTTGGGTTCAGAGATTAAGGAGT CTTTGATCAATTTGGATGGTGAAGATGGAGGGTTGTTGGATGATCTTGGTGAAGAGCTGATGGATTCTTTGTTGCTTGAGGGTGAATCTGATGGCAAGAA AGACAAGAAGCAAAGTAGCAAGGAGTCTAGATCAGATAGCAGGGGACACAACATACTTAGTCAGAGGATGAGAATGCTTAAAAGGCAAATGCAATGTCGT TTAGATATCGACAGGCTAAATGCTGCTTTTCTTGCAATTTATGAGTCACTGGTACCGCCAGAGGAAGAAACGGCTAAGCAGAAGCAATTTTTTATGTTGT TGGAGAAACTAGTTAGCAAGGAATGGCCTGAAGCTCGATTGTACCTATATGGTTCATGTGCCAATTCATTTGGAGTTTCAAAGAGTGATATAGATGTTTG CCTCACAATTGAGGATGCTGAGATTAAAAAGTCTGAGGTCTTGTTGAAGTTGGCAGATATATTGCAGGCGGATAACCTCCAGAATGTGCAGGCGTTGACT CGGGCTAGGGTTCCCATAGTAAAGCTTATGGATCCAGTGACTGGCATCTCTTGTGACATCTGCCTAAACAATGTTTTGGCTGTTGTGAATACCAAGCTTC TTCGGGATTATGCACAAATAGATGTGAGATTACGGCAGTTAGCTTTTGTAGTGAAACATTGGGCCAAGTCAAGAGGAGTAAATGCAACTTACCAAGGGAC CCTATCTAGCTATGCGTATGTTTTAATGTGCATTCATTTCTTACAGCAGCGTAGACCTGCTATCCTTCCATGCTTACAGGAAATGGGAACAACATACTCT GCTATTGTAGATGATATTCGGTGTGCCTACTTTGATCAAGTTGAGAAACTCCGTGGTTTTGGATCTCGTAACAAGGAAACAATTGCTCAATTAGTATGGG CATTTTTCAATTATTGGGCATATCGTCATGATTATGCAAATGGTGTTATATCTGTTCGAACAGGAAGCATAATCAGCAAACGGGAAAAGGACTGGACAAG GAGGATTGGGAATGATCGACATTTGATATGCATAGAGGACCCCTTTGAGATATCGCATGACCTTGGTAGAGTTGTGGATAAATTCAGCATAAAAGTTCTG AGAGAGGAGTTTGAGCGCGCAGCAGATATCATGCAGTATGACCCGAATCCCTGTGTAACGCTTTTTGAACCCTATAATACTCCTAGTTGA
AA sequence Show only first row Show all	>Potri.014G073300.2 pacid=42763401 polypeptide=Potri.014G073300.2.p locus=Potri.014G073300 ID=Potri.014G073300.2.v4.1 annot-version=v4.1 MASGGGEAPPIPPNANGGEFLLSLLQRPNHHHPPHQQQQSQFPSQFSPFITPQLQNQHPQPQPQPQPQPLGFDPAVAAVGPSLPLLPHQLLQSNGRDLLS NTPPLWSHNLGFPQKNHAFPHPHPLGNQFQGNQYLADDLQRSGLSIAEVRANNNNNNNLIQHLPQQKQQLEQKLQFGSFSSAIPSPADGLVNANLMREVG PGSRNFNGLERNRHLEKQANSHSTNFEVRQPGASSGGRGNLHKEQHQNYKSPPPGFSNKPRGGGGGGNWDHGGRRRELEHTMYREKGDYSELNNEKARRN EGSVEVRFTRQLDRPGPPPGSNLHSVLGSEIKESLINLDGEDGGLLDDLGEELMDSLLLEGESDGKKDKKQSSKESRSDSRGHNILSQRMRMLKRQMQCR LDIDRLNAAFLAIYESLVPPEEETAKQKQFFMLLEKLVSKEWPEARLYLYGSCANSFGVSKSDIDVCLTIEDAEIKKSEVLLKLADILQADNLQNVQALT RARVPIVKLMDPVTGISCDICLNNVLAVVNTKLLRDYAQIDVRLRQLAFVVKHWAKSRGVNATYQGTLSSYAYVLMCIHFLQQRRPAILPCLQEMGTTYS AIVDDIRCAYFDQVEKLRGFGSRNKETIAQLVWAFFNYWAYRHDYANGVISVRTGSIISKREKDWTRRIGNDRHLICIEDPFEISHDLGRVVDKFSIKVL REEFERAADIMQYDPNPCVTLFEPYNTPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45620			Nucleotidyltransferase family ...		Potri.014G073300 [exp]	0	1
AT5G05230			RING/U-box superfamily protein...		Potri.019G058300 [exp]	5.19	0.8125
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.003G031400 [exp]	5.65	0.8207
AT2G37035			unknown protein		Potri.016G091400 [exp]	5.65	0.8395
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	6.32	0.8421
AT1G79090			unknown protein		Potri.001G457800 [exp]	7.41	0.8330
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	18.24	0.8358	Pt-PPD1.4
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.001G312900 [exp]	19.49	0.8102
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	25.84	0.8336
AT3G59670			unknown protein		Potri.007G051100 [exp]	33.82	0.7718
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.005G125600 [exp]	34.95	0.8087

Compare expression of checked genes

Potri.014G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.