Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25420 482 / 5e-171 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 477 / 5e-169 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT1G60980 447 / 3e-157 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT5G07200 444 / 5e-156 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G44090 323 / 2e-108 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 184 / 2e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 168 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 167 / 3e-48 ATJRG21 jasmonate-regulated gene 21 (.1) AT5G24530 167 / 3e-48 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 165 / 5e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151300 [exp] 686 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G134600 [exp] 535 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.012G132400 [exp] 518 / 0 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.007G103800 [exp] 399 / 2e-138 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 386 / 5e-133 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 367 / 9e-126 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 356 / 9e-122 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.011G150100 [exp] 185 / 3e-55 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 184 / 6e-55 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 523 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 516 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10041390 [exp] 508 / 0 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10036539 [exp] 508 / 0 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10006350 [exp] 485 / 4e-172 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 485 / 4e-172 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10015016 [exp] 475 / 3e-168 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 169 / 7e-49 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032930 [exp] 163 / 6e-47 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015252 [exp] 164 / 8e-47 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G073700.1 pacid=42764771 polypeptide=Potri.014G073700.1.p locus=Potri.014G073700 ID=Potri.014G073700.1.v4.1 annot-version=v4.1 ATGCCCATTGATTGTTTCCCTTCAAACATGACAATTATGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGAGCCATTAGTATTTGATGCTTCAATCCTTC AACACCAAGCGAACTTACCCTCTCAGTTCATTTGGCCTGACCACGAAAAACCATGCCTTGAACCCCCAGAACTTGCAATCCCTCCGATTGATTTTGGAAG CTTCCTCACTGGAGATCCTTTGGCGGTCTCAAAACTTGCCCAGCAAGTAAATGAGGCATGCAAGAAGCATGGTTTCTTTGTAATTGTTAATCATGGTGTT GACTCAAAGCTTATAGCTAAAGCTCATGAGGGTATGAACATGTTCTTTGGTAAGCAGCTCTCGGAGAAGCCAGTTCAAAGGAAGATAGGAGAGCAATATG GGTATGCCAGTAGCTTCACTGGAAGATTCTCCTCCAAGCTTCCATGGAAAGAAACACTTTCTTTCAGATATTGTGCTGACAATCAGTCCTCTAACATCGT CCAAGAATACTTCTTGAATGTAATGGGAGAAGAATTCAAACAGTTCGGGAAGGTGTACCAAGAATATTGTGAAGCCATGAACACTCTTTCCCTTGGAATT ATGGAGCTATTAGGAGTAAGTCTAGGAGTTGGAAACGAATATTTTAGAGATTTCTTCGAAGGAAATGATTCAATAATGAGACTAAATTACTACCCTCCTT GCCAAAAACCGGAATTAACTCTTGGCACTGGGCCTCACTGTGATCCTACATCCTTAACAATTCTTCATCAAGATCATGTCAGTGGCCTTCAAGTGTTCGT CGAAGAAAAATGGCACTCCGTTACTCCTGATCCGGAAGCTTTCGTCGTTAACATTGGTGACACATTCATGGCTCTATCAAATGGCATTTTCAAGAGTTGC TTGCATAGAGCAGTGGTAAATAACGTAACAGTAAGGAAATCCCTCGCTTTCTTTCTATGTCCAAAAATGGACAAGGTGGTGAAGCCACCAAATACTTTGG TCGACTATAAAAATCCAAGGGTATATCCGGACTTCACATGGCTAGCTTTGTCAGAATTCACACAAAAACATTACAGGGCTGACATGAAAACCCTAGATGT CTTCACAACATGGCTTCAACAAAAAAACAACTGCGGGGGTACCAAAAATGCTTCTTCCTGTTAA
AA sequence Show only first row Show all	>Potri.014G073700.1 pacid=42764771 polypeptide=Potri.014G073700.1.p locus=Potri.014G073700 ID=Potri.014G073700.1.v4.1 annot-version=v4.1 MPIDCFPSNMTIMPPPPPPPPPPEPLVFDASILQHQANLPSQFIWPDHEKPCLEPPELAIPPIDFGSFLTGDPLAVSKLAQQVNEACKKHGFFVIVNHGV DSKLIAKAHEGMNMFFGKQLSEKPVQRKIGEQYGYASSFTGRFSSKLPWKETLSFRYCADNQSSNIVQEYFLNVMGEEFKQFGKVYQEYCEAMNTLSLGI MELLGVSLGVGNEYFRDFFEGNDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDHVSGLQVFVEEKWHSVTPDPEAFVVNIGDTFMALSNGIFKSC LHRAVVNNVTVRKSLAFFLCPKMDKVVKPPNTLVDYKNPRVYPDFTWLALSEFTQKHYRADMKTLDVFTTWLQQKNNCGGTKNASSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.014G073700 [exp]	0	1
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	1.41	0.7662	Pt-AHA6.2
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	4.69	0.7677
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	6.92	0.7545
AT5G16170			Core-2/I-branching beta-1,6-N-...		Potri.004G097700 [exp]	11.48	0.7339
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	13.85	0.7448
AT3G57170			N-acetylglucosaminyl transfera...		Potri.006G044500 [exp]	14.49	0.7296
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Potri.003G077700 [exp]	16.27	0.6905
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	19.07	0.7301
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	20.39	0.7129
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	21.63	0.7313

Compare expression of checked genes

Potri.014G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.