Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61130 1011 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 688 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT5G47780 625 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G46480 612 / 0 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 474 / 2e-160 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G20810 441 / 7e-148 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 441 / 8e-148 GAUT11 galacturonosyltransferase 11 (.1) AT3G02350 430 / 2e-143 GAUT9 galacturonosyltransferase 9 (.1) AT2G30575 419 / 1e-138 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT1G06780 400 / 3e-131 GAUT6 galacturonosyltransferase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151400 [exp] 1196 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 710 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 620 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 579 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 468 / 5e-158 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.019G108900 [exp] 456 / 9e-154 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.004G111000 [exp] 453 / 3e-152 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 452 / 8e-152 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.015G060800 [exp] 449 / 5e-151 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041389 [exp] 1035 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 1033 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 1018 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 719 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 689 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038739 [exp] 623 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10011834 [exp] 467 / 1e-157 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10013506 [exp] 451 / 6e-152 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10007979 [exp] 451 / 9e-152 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 449 / 4e-151 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.014G073800.4 pacid=42763260 polypeptide=Potri.014G073800.4.p locus=Potri.014G073800 ID=Potri.014G073800.4.v4.1 annot-version=v4.1 ATGGCGTTGAAGCGGGGATTATCAAGTTCGGGCGTGAACAAGAACCGAAGTGGTGGTGGTGGTGGATCTAGATTGCCGATTATACTCGTGATTTTCTTCT GCTTTTTGTCGCCGTTGATTTTCTTTGTCGGTCGACGACTCATTATAACAAGCTCCTCTGCTGATCAAAATAATAATAATAATGCAGTTGGTTCTGGTAA GCAGCAATTGGATTGGAGAGAACGGCTGGCCTTGCAACATGTGAAGCCTCTTTTCTCAAAAGAGGTCATTGATGTTATCGCATCCAGCACAGCTGATTTG GGGCCTTTGAGTCTTGATTCTTTTAGAAAAAACAAGTTGTCTGCCTCGTGGAAAGTTATTGGTGGAGAGACTCCAGTCGACAATAAGGCTGCTTCTGAGA CAAACCAAACAGCTACGGTTGTCAAGCAGGAAGCATCTAAGGGAAAAGTTGACAACATTTCTGAAGATAATGCTCGATCCGGTGACACACCTGCAAAACT AGCTCGAAGGCAATTGAGGGAGAAAAGACGTGAAAAACGTGTTGCAGAGTTACTGCGGCAAGATGATGAAGCAACTGCAAGACTTGAAAATGCAGCCATT GAACGCTCTAAATTAGTTGATGGTGCTGTTTTGGGAAAATACAGTATATGGAGGAAAGAAATGGATAATGAGAACTCTGATTCAACAGTACGCTTAATGC GGGATCAGATGATAATGGCAAGGGTGTATTTGAGCATTGCAAAGATGAAAAACAAGCGTGACTTGCTACAGGAACTTCAGACTCGGCTCAAAGAGAGTCA GCGTGCCCTTGGAGAGTCATCGGCTGATTCTGATCTACATCCCAGTGCACCTGGAAAGTTAAAAGCAATGGGCCAAGTTCTGTCAAAAGCAAGAGAGCAA TTGTATGACTGCAAGTTGGTTACTGGAAAGCTCAGAGCAATGCTTCAAACAGCAGATGAACAAGTTAGGAGCTTAAAAAAACAGAGCACATTCCTGAGTC AACTGGCTGCCAAAACAGTTCCTAATGGAATCCATTGCTTGTCTATGCGCCTAACAATTGACTACTACCTCCTTCCTCTTGAGAAGAGAAAGTTTCCTAG AAGTGAGGATTTGGAAAATCCAAATCTTTATCATTATGCCCTCTTCTCTGACAATGTCTTGGCTGCATCAGTTGTTGTCAACTCAACCATCATGAATGCC AAGGATTCTTCCAAACATGTCTTCCATCTTGTTACTGATAAACTCAACTTTGGAGCGATGAATATGTGGTTTCTACTGAACCCTCCTGGAAAAGCTACTA TCCATGTTGAAAATGTTGATGAATTCAAGTGGCTCAATTCATCCTACTGCCCAGTTCTGCGCCAGCTTGAATCTGCTGCAATGAAAGAGTATTACTTCAA AGCAAATCATCCAACTTCTCTCTCATCTGGCTCTTCAAATCTGAAGTATCGAAACCCTAAGTATCTTTCAATGCTTAACCACTTGAGGTTCTATCTCCCA CAGGTCTATCCCAAGTTGGATAAGATCCTGTTTCTTGATGATGACATTGTTGTGCAGAAAGATTTAACTAAATTGTGGTCAGTGGATCTAAATGGAAAAG TGAATGGGGCAGTGGAAACCTGTGGTGAAAGTTTTCACCGGTTTGATAAGTACCTTAACTTTTCAAATCCCCATATTGCCAGACACTTTGATCCAAATTC TTGTGGGTGGGCATATGGGATGAATATTTTTGATCTTAAGGTGTGGAAAAAGAAGGATATTACAGGAATATATCACAAGTGGCAAAACATGAATGAAGAC AGGGTACTGTGGAAGCTTGGGACATTGCCTCCAGGGCTGATTACATTTTATAATCTGACACATCCTCTTCAGAAATCATGGCATGTGCTTGGATTGGGTT ATAATCCAAGCATTGATAGGTCAGAAATTGAAAATGCAGCTGTTGTCCACTATAACGGTAACATGAAGCCATGGCTGGAGTTAGCAATGACTAAATATCG ACCATATTGGACCAAGTACATCAAGTATGATCATCCATACCTTCGAAATTGCAACCTAAGCGAGTGA
AA sequence Show only first row Show all	>Potri.014G073800.4 pacid=42763260 polypeptide=Potri.014G073800.4.p locus=Potri.014G073800 ID=Potri.014G073800.4.v4.1 annot-version=v4.1 MALKRGLSSSGVNKNRSGGGGGSRLPIILVIFFCFLSPLIFFVGRRLIITSSSADQNNNNNAVGSGKQQLDWRERLALQHVKPLFSKEVIDVIASSTADL GPLSLDSFRKNKLSASWKVIGGETPVDNKAASETNQTATVVKQEASKGKVDNISEDNARSGDTPAKLARRQLREKRREKRVAELLRQDDEATARLENAAI ERSKLVDGAVLGKYSIWRKEMDNENSDSTVRLMRDQMIMARVYLSIAKMKNKRDLLQELQTRLKESQRALGESSADSDLHPSAPGKLKAMGQVLSKAREQ LYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTVPNGIHCLSMRLTIDYYLLPLEKRKFPRSEDLENPNLYHYALFSDNVLAASVVVNSTIMNA KDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKANHPTSLSSGSSNLKYRNPKYLSMLNHLRFYLP QVYPKLDKILFLDDDIVVQKDLTKLWSVDLNGKVNGAVETCGESFHRFDKYLNFSNPHIARHFDPNSCGWAYGMNIFDLKVWKKKDITGIYHKWQNMNED RVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYNPSIDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNLSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	0	1
AT3G62060			Pectinacetylesterase family pr...		Potri.014G110900 [exp]	2.00	0.9335
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	2.44	0.9379	ALDH22.1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	3.00	0.9349	Pt-CLF.1
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.011G166100 [exp]	3.46	0.9311
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	4.24	0.9385
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	4.89	0.9282
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	5.09	0.9155
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	5.29	0.9293
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	8.18	0.8992
AT1G16170			unknown protein		Potri.001G038200 [exp]	8.48	0.9272

Compare expression of checked genes

Potri.014G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.