Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45660 243 / 1e-81 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G22950 213 / 6e-70 MADS AGL19 AGAMOUS-like 19 (.1) AT5G62165 207 / 9e-68 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT4G11880 190 / 9e-61 MADS AGL14 AGAMOUS-like 14 (.1) AT5G51860 169 / 1e-52 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT5G51870 164 / 1e-50 MADS AGL71 AGAMOUS-like 71 (.1.2.3) AT4G18960 152 / 1e-45 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45650 144 / 1e-42 MADS AGL6 AGAMOUS-like 6 (.1) AT4G09960 142 / 5e-42 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 141 / 2e-41 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151700 [exp] 335 / 9e-118 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.001G112400 [exp] 236 / 9e-79 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 233 / 2e-77 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G133000 [exp] 209 / 2e-68 AT5G62165 218 / 3e-72 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Potri.011G075800 [exp] 148 / 5e-44 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G064300 [exp] 147 / 2e-43 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 143 / 3e-42 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.013G104900 [exp] 142 / 9e-42 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.002G109601 [exp] 137 / 7e-40 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006715 [exp] 213 / 4e-69 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10014143 [exp] 199 / 1e-63 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10031665 [exp] 153 / 5e-47 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10014144 [exp] 151 / 5e-46 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10006716 [exp] 144 / 3e-43 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1) Lus10008264 [exp] 145 / 3e-42 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 144 / 4e-42 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10036542 [exp] 137 / 3e-40 AT2G45660 137 / 6e-41 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10004638 [exp] 137 / 5e-40 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10027404 [exp] 135 / 2e-39 AT5G62165 154 / 3e-47 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.014G074200.9 pacid=42763138 polypeptide=Potri.014G074200.9.p locus=Potri.014G074200 ID=Potri.014G074200.9.v4.1 annot-version=v4.1 ATGATCAAAGCTCTCGTGGGTTTATTGCCTATTTGGTATAGAGAGATGGTGAGAGGGAAGACACAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAG TTACCTTCTCTAAGCGGAGAAATGGGCTGCTGAAGAAGGCTTTTGAATTGTCAGTTCTTTGTGATGCTGAGGTTGCCCTTATTGTCTTCTCTCCTAGAGG AAAGCTCTATGAATTTGCAAGCACAAGCATGCAGGAGACCATTGAACGTTATCGAAGGCACGTGAAAGAAAACAACACAAACAAGCAGCCTGTTGAACAG AACATGCTGCAACTAAAGGAAGAAGCAGCAAGCATGATAAAGAAGATAGAGCATCTTGAAGTTTCAAAACGAAAGCTACTGGGAGAATGTTTGGGATCAT GCACTGTTGAAGAACTACAACAGATCGAACAACAGTTAGAGAGGAGTGTAAGCACCATCCGTGCGAGAAAGAATCAGGTTTTCAAAGAACAGATTGAGCT GCTAAGACAAAAGGAGAAGCTACTGGCAGCTGAAAATGCAAGACTGTCTGACGAGTGTGGTGCACAGTCATGGCCAGTCTCAAGGGAACAGAGAGATTTA CCCCGTGAAGATCTGAGAGAAAGCAGTTCAATTTCGGATGTGGAGACGGAATTGTTCATTGGACCACCAGAAACAAGAACAAAGCGCATCCCTCCAAGAA ACTAG
AA sequence Show only first row Show all	>Potri.014G074200.9 pacid=42763138 polypeptide=Potri.014G074200.9.p locus=Potri.014G074200 ID=Potri.014G074200.9.v4.1 annot-version=v4.1 MIKALVGLLPIWYREMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASTSMQETIERYRRHVKENNTNKQPVEQ NMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCTVEELQQIEQQLERSVSTIRARKNQVFKEQIELLRQKEKLLAAENARLSDECGAQSWPVSREQRDL PREDLRESSSISDVETELFIGPPETRTKRIPPRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.014G074200 [exp]	0	1
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	6.16	0.9192
					Potri.005G184800 [exp]	7.81	0.9428
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	19.28	0.9322
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.015G089700 [exp]	24.12	0.9316
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	24.33	0.9304
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	25.09	0.9274
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	33.91	0.9301
AT1G24420			HXXXD-type acyl-transferase fa...		Potri.006G034132 [exp]	34.78	0.9232
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Potri.002G192400 [exp]	37.41	0.9256
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	41.78	0.9198

Compare expression of checked genes

Potri.014G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.