Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45670 710 / 0 calcineurin B subunit-related (.1.2) AT1G80950 128 / 2e-32 Phospholipid/glycerol acyltransferase family protein (.1) AT5G60620 55 / 7e-08 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT4G14640 44 / 4e-05 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G27030 43 / 6e-05 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G22930 43 / 0.0001 CML11 calmodulin-like 11 (.1) AT3G43810 43 / 0.0001 CAM7 calmodulin 7 (.1) AT1G66410 43 / 0.0001 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 43 / 0.0001 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT2G41110 43 / 0.0001 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151800 [exp] 963 / 0 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 144 / 7e-38 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 130 / 7e-33 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.009G143200 [exp] 61 / 9e-10 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 54 / 2e-07 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.010G080900 [exp] 50 / 3e-07 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.009G102500 [exp] 48 / 4e-06 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.008G159300 [exp] 47 / 5e-06 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G052800 [exp] 46 / 8e-06 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015853 [exp] 764 / 0 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 753 / 0 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 753 / 0 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 694 / 0 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2) Lus10003950 [exp] 128 / 3e-32 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 109 / 6e-26 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10023947 [exp] 59 / 3e-09 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 58 / 8e-09 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10036667 [exp] 51 / 2e-06 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10009176 [exp] 47 / 9e-06 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.014G074300.1 pacid=42763969 polypeptide=Potri.014G074300.1.p locus=Potri.014G074300 ID=Potri.014G074300.1.v4.1 annot-version=v4.1 ATGGCAAACCATGATCTCGAATCCCCTCTCCTCTCCTCCCAGCCGTCAGATCCTCCACATATAATCCTTAACGTTCATGACTCTGACTCCTCCATCCAAC AATCCAACAACCACAAACCGAATCCTAATACTTCTTCTCGCAACCCATTTGAATTTATCGGGTCAGATGGGTTGTCCGTACCCGCACCATCAACATTGGA TCCGTTTAGAAACGATACGCCTGATATTGAGGGATTATATGAACTGATCAAGATTGTGATTTGCTTGCCAATTGCAATAGTAAGATTGGTGCTTTTTGGG GTTTGTTTGGCTACAGGGTATGTTGCAACGAAGATCGCATTACTAGGATGGAGGGATAAGCATAATCCTATGCCCAAGTGGAGGTCTAGGTTAATGTGGC TCACTAGGGGGTGTACTCGCTGTATTTTATTCTCCTTTGGTTATCATTGGATCAAAAGAAAAGGAAAGCTTGCTCCGAGAGAAATTGCACCGATTGTTGT GTCTAATCATGTATCATATATCGATCCAATTTTTTATTTTTTTGAATTCTTCCCAACAATTGTTGCGGCAGAGTCACACGATTCTATGCCCTTTGTTGGA ACTATTATTAGAGCAATGCAGGTGATCTATGTCAATAGATTTTCACCATCATCAAGGAAGCTTGCTGTTAATGAAATAAAGAGAAAGGCTTCGTGTGGTA GATTTCCTCGAGTTCTTTTGTTTCCCGAGGGAACAACAACTAATGGAAAGGTTCTCATTTCATTCCAACTTGGAGCGTTCATCCCTGGTTATGCAGTTCA ACCAGTAATTGTTCGCTATCCCCATGTTCACTTTGATCAATCTTGGGGGAATGTTTCTCTGGGAATGCTCATGTTTAGAATGTTCACACAGTTTCACAAT TTTATGGAGGTAGAATATCTACCGATTGTTTCCCCCCTTGATAACTGCAAAGAAAATCCTTCCCATTTTGCCAAGAGGACTAGCCATGCCATTGCATCTG CTCTCAATGTTGTTCAAACTAATCACTCGTATGGCGACTTGATGCTTCTCATGAAAGCATCTGAGTTGAAGCAGGAGAAGCCCTCAAGTTATATGGTTGA AATGGCGAAGGTGGAATCATTATTTCATATAAACAGCTTAGAAGCAGTGAACTTTCTGGACAAGTTTCTGTCTATGAACCCAGATGCCAGTGGTCGTGTT AAATTCAATGACTTTTTGAGGGCTTTCAGACTGAGGACTTGCACACTTTCAGAAGAGTTATTTGGGTTCCTTGATGTAGAGAAGAATGGATCGATTACAT TCAAGCAGTTCTTGTATGGATCAGCCCATGTCATGAAGCGACCACTATTCCACCAATCCTGTGAACTAGCTTTTGCTCAATGCGACACTAGAGGACATAA TCAAATTTCAGAACAAGAATTGGGAGAAACCATTAGACATGCAATCCCAGACTTCGATGAGGATGAGATCCATGAGCTCTTCAGTATATTTGATATGGAT GGTGATGGGAGCGTCAGCAAGGATAATTTTCTTTATTGTCTAAGACAGAACCCTTTGCTGATAGCACTTTTTAAACCTTGTCTGGTGCACAAGGACTCGT CACAAGTTGGTCAGGGGATCCTGGAGGAGATCGTATGA
AA sequence Show only first row Show all	>Potri.014G074300.1 pacid=42763969 polypeptide=Potri.014G074300.1.p locus=Potri.014G074300 ID=Potri.014G074300.1.v4.1 annot-version=v4.1 MANHDLESPLLSSQPSDPPHIILNVHDSDSSIQQSNNHKPNPNTSSRNPFEFIGSDGLSVPAPSTLDPFRNDTPDIEGLYELIKIVICLPIAIVRLVLFG VCLATGYVATKIALLGWRDKHNPMPKWRSRLMWLTRGCTRCILFSFGYHWIKRKGKLAPREIAPIVVSNHVSYIDPIFYFFEFFPTIVAAESHDSMPFVG TIIRAMQVIYVNRFSPSSRKLAVNEIKRKASCGRFPRVLLFPEGTTTNGKVLISFQLGAFIPGYAVQPVIVRYPHVHFDQSWGNVSLGMLMFRMFTQFHN FMEVEYLPIVSPLDNCKENPSHFAKRTSHAIASALNVVQTNHSYGDLMLLMKASELKQEKPSSYMVEMAKVESLFHINSLEAVNFLDKFLSMNPDASGRV KFNDFLRAFRLRTCTLSEELFGFLDVEKNGSITFKQFLYGSAHVMKRPLFHQSCELAFAQCDTRGHNQISEQELGETIRHAIPDFDEDEIHELFSIFDMD GDGSVSKDNFLYCLRQNPLLIALFKPCLVHKDSSQVGQGILEEIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	0	1
AT3G20720			unknown protein		Potri.001G417200 [exp]	1.00	0.8201
AT3G59090			unknown protein		Potri.005G203600 [exp]	5.47	0.7805
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.008G110500 [exp]	8.94	0.7387
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.001G197600 [exp]	15.09	0.7540
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	18.76	0.6370	Pt-GLT1.3
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	22.91	0.7433
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	23.06	0.7143
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.008G174800 [exp]	25.41	0.7088
AT1G04200			unknown protein		Potri.010G081800 [exp]	25.92	0.7115
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	27.49	0.7054

Compare expression of checked genes

Potri.014G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.