Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31010 500 / 2e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 331 / 1e-111 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT2G20020 292 / 3e-92 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 278 / 2e-88 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 62 / 6e-10 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 56 / 3e-08 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 50 / 2e-06 ATCFM3B CRM family member 3B (.1) AT4G29750 46 / 5e-05 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G25440 45 / 6e-05 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 45 / 7e-05 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423800 [exp] 341 / 1e-115 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G163100 [exp] 287 / 5e-90 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 268 / 2e-84 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 63 / 2e-10 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 59 / 5e-09 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 57 / 1e-08 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 47 / 2e-05 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.001G343700 [exp] 44 / 0.0001 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 43 / 0.0003 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041383 [exp] 545 / 0 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10036545 [exp] 493 / 4e-175 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 336 / 3e-113 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 283 / 5e-90 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 282 / 3e-89 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 282 / 3e-89 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 278 / 1e-87 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 275 / 2e-85 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10019623 [exp] 236 / 3e-76 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 160 / 7e-45 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.014G074400.1 pacid=42764120 polypeptide=Potri.014G074400.1.p locus=Potri.014G074400 ID=Potri.014G074400.1.v4.1 annot-version=v4.1 ATGTCCCCTCTCACGCGCCTCTCCGGCCAAAAACACTTCTTCCTCACGCGCCACCTCTCATCCTCCACCGCATCCTCAAAACTGCACGATATTTATTGCT TCAAGCCGCCACCTTCCCTATCCCCTGAAAAACCCCAGACCTCCAACAACAACAACAACAAAAAGAAGCAAAAACCCGAATATCGCCCACCTTCTTCTCT TGAAACCAACAAGAAACCCTTGCGCTCCGACTTACCATTCGATTTCCGTTTTAGTTACACGGAGAGTAGCCCGGATGTGAGGCCCATTGGGCTTAGAGAG CCCAAGTACTCACCTTTTGGGCCGGGCCGGCTAGACCGGACCTGGACTGGAGTTTGTGCACCGGCTGTCGACCTGAAGGTGAAGTCGGTTGATGATGGGG TGGGTGAGGAGGGTCTTGATTTGGAAGAGAAACGAACGGTTATGAGAGAGAAGATTCAAGGGAAGCCATTAACTAAGGCGGAGGGGAAGATTTTGGTGGA CAAGTGTCAGAGGAATAAAACTAAGAAGCAAATTAATTTGGGAAGAGATGGTTTAACTCACAACATGCTGAATGATATTCATAATCACTGGAAACATGAT GAAGCAGTCAGAGTTAAGTGTATGGGTGTTCCAACTGTTGACATGAAAAACGTCTGCACCCAGCTTGAGGATAAAACCTTTGGGAAGATCATTCATAGAC ATTGTGGTCTACTTGTGTTGTATAGAGGCAGGAACTATCATCCCAGGAACAGGCCCGTGATTCCATTGATGCTGTGGAAACCTCATGAGCCTGTATATCC CAGGTTGATCAAAACCACTATCGATGGCCTAAGCATCGAGGAGACAAAGGAAATGAGAAAGAGAGGACTTGCAGTTCCAGCTTTAACAAAACTTTCCAGA AATGGCTATTTTGGTAGCCTGGTACCCATGGTCAGAGATGCTTTTCTCGTCAGTGAGCTTGTTCGAATAGACTGCCAGGGCCTTGACAGGAGTGATTCCA AGAAAATAGGCTGCAAACTTAGGGACCTGGTTCCTTGTATCCTTGTAACATTTGACAAGGAGCAGATTGTGGTATGGAGGGGGAAGGACTATAAGCCTCC AGAAGATGAGGATGGACAGTTCTTTGCTGATCGACAACCTTTTGATGATCCACAGAGCGATATGGATTGTATCAAAGAGAAACTTAGCTCAGATGAAACC AGATTTCAGCAAGAGTAA
AA sequence Show only first row Show all	>Potri.014G074400.1 pacid=42764120 polypeptide=Potri.014G074400.1.p locus=Potri.014G074400 ID=Potri.014G074400.1.v4.1 annot-version=v4.1 MSPLTRLSGQKHFFLTRHLSSSTASSKLHDIYCFKPPPSLSPEKPQTSNNNNNKKKQKPEYRPPSSLETNKKPLRSDLPFDFRFSYTESSPDVRPIGLRE PKYSPFGPGRLDRTWTGVCAPAVDLKVKSVDDGVGEEGLDLEEKRTVMREKIQGKPLTKAEGKILVDKCQRNKTKKQINLGRDGLTHNMLNDIHNHWKHD EAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIHRHCGLLVLYRGRNYHPRNRPVIPLMLWKPHEPVYPRLIKTTIDGLSIEETKEMRKRGLAVPALTKLSR NGYFGSLVPMVRDAFLVSELVRIDCQGLDRSDSKKIGCKLRDLVPCILVTFDKEQIVVWRGKDYKPPEDEDGQFFADRQPFDDPQSDMDCIKEKLSSDET RFQQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Potri.014G074400 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G077066 [exp]	3.46	0.8966
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	8.48	0.8873
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	8.94	0.8700	GTC903
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.002G085700 [exp]	10.24	0.8601
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	15.62	0.8705
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	17.32	0.8615
					Potri.013G048150 [exp]	18.49	0.8463
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	20.00	0.8589
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.008G108300 [exp]	20.12	0.8187
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	21.81	0.8301

Compare expression of checked genes

Potri.014G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.