Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00230 789 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G03620 541 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 477 / 3e-161 subtilase family protein (.1) AT5G58840 461 / 1e-154 Subtilase family protein (.1) AT5G59120 461 / 1e-154 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 461 / 2e-154 Subtilase family protein (.1) AT5G58830 450 / 1e-150 Subtilisin-like serine endopeptidase family protein (.1) AT5G59100 447 / 3e-149 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 447 / 3e-149 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59130 437 / 2e-145 Subtilase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151900 [exp] 1050 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 561 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 550 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 549 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G145600 [exp] 533 / 0 AT5G03620 615 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 530 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 504 / 2e-172 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.012G133200 [exp] 497 / 1e-167 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.009G038001 [exp] 491 / 3e-166 AT3G46850 794 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009313 [exp] 879 / 0 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10009868 [exp] 533 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 525 / 1e-179 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004685 [exp] 523 / 2e-178 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10020582 [exp] 521 / 1e-177 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 539 / 2e-177 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 513 / 2e-176 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10002964 [exp] 512 / 8e-174 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 507 / 7e-173 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10042555 [exp] 503 / 2e-170 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.014G074500.3 pacid=42764773 polypeptide=Potri.014G074500.3.p locus=Potri.014G074500 ID=Potri.014G074500.3.v4.1 annot-version=v4.1 ATGGAGAGAAACATAGTTGTGGGTCTACTGGATACAGGGATCACTCCGCAGTCTGAGAGCTTTAAGGATGATGGTTTTGGTCCTCCTCCTAAAAAATGGA AAGGCACTTGCGGCCACTACACTAATTTCTCAGGATGCAACAATAAGCTTGTAGGAGCTAGATACTTCAAGCTCGATGGCAACCCGGATCCCAGTGACAT CTTATCTCCAGTAGATGTGGATGGCCATGGGACACACACATCATCTACACTAGCAGGAAACCTGATTCCAGATGCCAGCCTATTTGGTCTAGCAGGAGGG GCTGCACGCGGTGCAGTGCCAAACGCCAGGGTAGCCATGTATAAAGTGTGTTGGATCAGCTCTGGTTGCTCGGATATGGACTTACTTGCTGCATTTGAAG CTGCTATACATGATGGTGTTGATGTTCTATCAATATCTATTGGTGGAGTGGATGCTAATTATGTATCAGATGCATTAGCCATAGGTGCATTTCATGCCAT GAAGAAAGGAATTATCACAGTGGCCTCCGGTGGAAATGATGGACCGTCTTCTGGTTCTGTTGCCAACCATGCTCCCTGGATCTTGACCGTTGCAGCCAGT GGAATCAACCGGGAGTTTAGGAGCAAAGTTGAGTTGGGAAATGGGAAGATTTTCTCAGGTGTTGGAGTGAACACATTTGAACCAAAACAGAAATCATACC CCCTTGTTAGTGGGGCTGAAGCTGGTTACTCTGGACGCCAGGACAGTGCAAGGTTCTGTGATGCAGGCTCGTTGGACCCTAACAAAGTGAAAGGCATTCT TCTTGAGAGTCAGCAATATCTTGACGCAGCCCAAATTTTTATGGCACCAGCAACCATGGTCAACGCCACAGTAAGCGGCGCAGTCAATGATTATATACAT TCCACAACATTTCCATCAGCAATGATATACAGATCCCAAGAAGTAGAAGTCCCTGCTCCATTTGTCGCTTCTTTTTCATCTCGGGGTCCAAATCCAGGAT CAGAACGCATTCTCAAGCCCGACGTTGCAGCACCAGGAATTGACATTTTGGCATCATACACTCCCTTGAGGTCGCTCACCGGGCTGAAAGGTGATACACA GCACTCAAGATTTTCTCTTATGTCAGGGACTTCCATGGCCTGCCCTCACGTTTCTGGGCTAGCTGCCTATATAAAGTCGTTCCATCCAAATTGGACAGCA GCAGCAATCAAATCCGCCATCCTGACAACAGCAAAACCTATGAGCTCCAGAGTGAACAACGACGCAGAATTTGCCTATGGTGCTGGTCAAATAAATCCTC TTAGAGCTAGAAACCCTGGCCTAGTCTATGACATGGACGAGATGTCTTACATTCAGTTCTTATGCCACGAAGGCTACAATGGATCCTCCTTCGCTGTTTT AGTTGGTTCAAAAGCCATCAATTGCTCCTCATTGCTTCCTGGACTTGGCTATGATGCTCTTAACTATCCGACTATGCAACTTAATGTAAAAAATGAGCAG GAACCAACCATAGGAGTTTTTACAAGGACAGTCACCAATGTAGGCCCTTCTCCTTCCATCTACAATGCAACCATTAAGGCTCCTGAAGGAGTAGAAATCC AAGTAAAACCCACGAGCCTCTCCTTCTCTGGTGCCGCGCAGAAGCGAAGTTTTAAGGTTGTGGTCAAGGCAAAACCCCTGTCAGGACCTCAAATATTGTC AGGTTCACTTGTATGGAAAAGTAAGCTTCACGTTGTAAGGAGCCCTATCGTTATTTTCAAACCCCTGGACTAA
AA sequence Show only first row Show all	>Potri.014G074500.3 pacid=42764773 polypeptide=Potri.014G074500.3.p locus=Potri.014G074500 ID=Potri.014G074500.3.v4.1 annot-version=v4.1 MERNIVVGLLDTGITPQSESFKDDGFGPPPKKWKGTCGHYTNFSGCNNKLVGARYFKLDGNPDPSDILSPVDVDGHGTHTSSTLAGNLIPDASLFGLAGG AARGAVPNARVAMYKVCWISSGCSDMDLLAAFEAAIHDGVDVLSISIGGVDANYVSDALAIGAFHAMKKGIITVASGGNDGPSSGSVANHAPWILTVAAS GINREFRSKVELGNGKIFSGVGVNTFEPKQKSYPLVSGAEAGYSGRQDSARFCDAGSLDPNKVKGILLESQQYLDAAQIFMAPATMVNATVSGAVNDYIH STTFPSAMIYRSQEVEVPAPFVASFSSRGPNPGSERILKPDVAAPGIDILASYTPLRSLTGLKGDTQHSRFSLMSGTSMACPHVSGLAAYIKSFHPNWTA AAIKSAILTTAKPMSSRVNNDAEFAYGAGQINPLRARNPGLVYDMDEMSYIQFLCHEGYNGSSFAVLVGSKAINCSSLLPGLGYDALNYPTMQLNVKNEQ EPTIGVFTRTVTNVGPSPSIYNATIKAPEGVEIQVKPTSLSFSGAAQKRSFKVVVKAKPLSGPQILSGSLVWKSKLHVVRSPIVIFKPLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.014G074500 [exp]	0	1
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	1.73	0.8548
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	3.00	0.8092
					Potri.017G152701 [exp]	7.14	0.8322
AT1G70140		ATFH8	formin 8 (.1)		Potri.008G192900 [exp]	10.39	0.8206
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	11.31	0.8092
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	12.72	0.8178
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	13.60	0.7641
					Potri.006G120650 [exp]	14.28	0.8011
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G200400 [exp]	15.49	0.7831
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	17.32	0.7822

Compare expression of checked genes

Potri.014G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.