Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01900 788 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G67360 691 / 0 ARA12 Subtilase family protein (.1) AT5G51750 687 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14240 640 / 0 Subtilase family protein (.1) AT2G05920 636 / 0 Subtilase family protein (.1) AT3G14067 633 / 0 Subtilase family protein (.1) AT4G34980 595 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 573 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G04160 546 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 489 / 3e-162 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G018900 [exp] 671 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 670 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 660 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 657 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 654 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 652 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 649 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 649 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.005G145300 [exp] 641 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041382 [exp] 946 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10036546 [exp] 939 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10034900 [exp] 662 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 659 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 658 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 658 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 646 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 645 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 620 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 617 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.014G074600.1 pacid=42764157 polypeptide=Potri.014G074600.1.p locus=Potri.014G074600 ID=Potri.014G074600.1.v4.1 annot-version=v4.1 ATGATCTTTAGGATATCTTTGCTGTTGCTGGCCTTCATGGCTGCAAAAGCAAGTGCTGCTTCAATTGACAAGCAGACATATATAATTCACATGGACAAAA ACAAGATGCCTGCCTTATATGACTTTCTCGGCAATTCCAGGCAGTGGTATGAATCAGTAATTGATTCCATCACCCAATTCTCATCCCAAGAACATGAAGA GGAGCATGAAACAGGATTTCCTCAGCTTCTCTACACCTACGAAACAGTGACTTCTGGTTTCGCTGCGAAACTCTCCACCAAACAAGTTGAGGCCTTGAGC CGAGTCGATGGCTTTCTCTCTGCCATTCCTGATGGAATGCTGACTCTCCACACCACACACACCCCTCGGTTCCTTGGACTGCAAAGTGGAAAGGGACTAT GGAATGCTCAAAATCTGGCTTCAGATGTGATAGTTGGCATTCTTGATACTGGAATCTGGCCTGAACATGTTAGCTTCCAAGACTCGGGCATGTCTGCAGT ACCCTTGAAATGGAAAGGCAAATGCGAGAGTGGCACAAAGTTTTCACCATCAAATTGCAACAAGAAGCTGATTGGTGCAAGAGCCTTCTTCAAAGGGTAC GAGTCTATTGTAGGAAGAATTAATGAAACAATTGATTATCGATCCCCTCGGGACTCACAAGGCCATGGAACACATACTGCAGCAACTGCTGCCGGTAACC TTGTAGACGAAGCAAGCTTTTATGGATTGGCAAACGGTTCGGCAGCTGGAATGAAGTACACAGCAAGAATTGCCGCTTACAAAGTCTGCTGGACATCAGG TTGTACCAACACCGATTTATTGGCTGCCATAGACCAAGCTGTTGCTGATGGGGTTGATGTGTTATCACTCTCTTTAGGGGGTTCTGCAAAGCCTTTTTAT AGTGATAGCGTTGCTATAGCGTCATTTGGGGCAATCCAAAAGGGGGTTTTTGTTTCTTGCTCTGCTGGCAATTCAGGTCCATCTATCTCCTCAGTTGACA ACAATGCTCCATGGATCATGACAGTAGCTGCTAGCTACACCGACCGAAGGTTTCCAACAACTGTCAAGCTTGGAAATGGACAAACTTTTGAAGGGGCATC TCTATATACAGGCAAGGCAACAGCACAGTTACCACTAGTGTATGCAGGGACTGCAGGTGGCGAAGGAGCTGAGTATTGTATAATTGGGTCGCTGAAGAAA AAGTTGGTGAAAGGCAAAATGGTTGTTTGCAAGAGGGGAATGAATGGCCGAGCCGAAAAAGGAGAGCAAGTGAAATTGGCAGGAGGGACAGGAATGCTTT TAATCAATACAGAAACTGGAGGGGAAGAGCTTTTCGCAGACGCTCACTTTCTGCCGGCAACTTCTTTAGGAGCCTCAGCAGGTATAGCTGTCAAAGAGTA TATGAACTCAACTAAAAGGGCAACTGCTTCGATTGCCTTCAAAGGGACAGTGTATGGTAATCCTGCACCAATGTTGGCTGCATTTTCATCCAGAGGACCT AGTTCAGTGGGACCAGATGTGATCAAGCCAGATGTGACTGCACCAGGGGTGAACATTTTAGCAGCGTGGCCACCAATGACTAGCCCAACTCTACTTAAAA GCGACAAAAGAAGCGTATTGTTCAATGTAATTTCAGGCACTTCAATGTCCTGCCCTCATGTTAGTGGTCTAGCTGCACTACTTAAGTCAGTCCATAAAAC ATGGTCACCAGCAGCAATCAAATCAGCACTAATGACAACAGCTTATGTTACAGACAACAGGGGATCTCCAATTGCAGATGCTGGGTCCAGCAACTCTGCA TCAGCTACCCCTTTTGCATTTGGCTCGGGCCATGTTGATCCAGAGAGTGCTTCAGATCCAGGGTTGATATATGACATTACCATAGAAGACTATTTAAACT ATTTTTGCAGCCTAAACTACACATCTTCTCAAATAGCTCAAGTGTCCAGGCGTAATGTCACTTGTCCTGACAATAAAGCTCTCCAGCCCGGTGACCTGAA CTACCCTTCTTTTGCAGTGAATTTTGAAGGCAATGCTCGAAATAACAGGGTGAAATACAAGAGAACCCTGACAAATGTCGGGACCCCTTGGAGCACCTAT GCAGTAAAAGTGGAAGAACCCAATGGAGTATCAGTGATCCTGGAGCCTAAGAGTTTGAGTTTTGAAAAATTGGGACAGAAACTGAGTTACAATGTGACCT TTGTTAGTTCACGAGGAAAAGGTAGAGAAGGCAGTTCCTCTTTTGGATCTTTAGTTTGGCTGTCAGGAAAATATAGTGTTAGAAGTCCCATAGCAGTGAC CTGGCAGTAG
AA sequence Show only first row Show all	>Potri.014G074600.1 pacid=42764157 polypeptide=Potri.014G074600.1.p locus=Potri.014G074600 ID=Potri.014G074600.1.v4.1 annot-version=v4.1 MIFRISLLLLAFMAAKASAASIDKQTYIIHMDKNKMPALYDFLGNSRQWYESVIDSITQFSSQEHEEEHETGFPQLLYTYETVTSGFAAKLSTKQVEALS RVDGFLSAIPDGMLTLHTTHTPRFLGLQSGKGLWNAQNLASDVIVGILDTGIWPEHVSFQDSGMSAVPLKWKGKCESGTKFSPSNCNKKLIGARAFFKGY ESIVGRINETIDYRSPRDSQGHGTHTAATAAGNLVDEASFYGLANGSAAGMKYTARIAAYKVCWTSGCTNTDLLAAIDQAVADGVDVLSLSLGGSAKPFY SDSVAIASFGAIQKGVFVSCSAGNSGPSISSVDNNAPWIMTVAASYTDRRFPTTVKLGNGQTFEGASLYTGKATAQLPLVYAGTAGGEGAEYCIIGSLKK KLVKGKMVVCKRGMNGRAEKGEQVKLAGGTGMLLINTETGGEELFADAHFLPATSLGASAGIAVKEYMNSTKRATASIAFKGTVYGNPAPMLAAFSSRGP SSVGPDVIKPDVTAPGVNILAAWPPMTSPTLLKSDKRSVLFNVISGTSMSCPHVSGLAALLKSVHKTWSPAAIKSALMTTAYVTDNRGSPIADAGSSNSA SATPFAFGSGHVDPESASDPGLIYDITIEDYLNYFCSLNYTSSQIAQVSRRNVTCPDNKALQPGDLNYPSFAVNFEGNARNNRVKYKRTLTNVGTPWSTY AVKVEEPNGVSVILEPKSLSFEKLGQKLSYNVTFVSSRGKGREGSSSFGSLVWLSGKYSVRSPIAVTWQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Potri.014G074600 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	1.73	0.7309
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120400 [exp]	3.16	0.7054
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	6.48	0.6718
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	10.77	0.6664
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	11.61	0.6487
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	17.60	0.6486
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.002G167100 [exp]	17.66	0.6020	Pt-GBF3.2
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	19.89	0.6122	RGA.58
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	20.19	0.6312
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120401 [exp]	25.07	0.5675

Compare expression of checked genes

Potri.014G074600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.