Plant FIBer expression Database

Potri.014G074900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00231 436 / 2e-149 MEE50 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G158901
[exp]
229 / 2e-73 AT4G00231 154 / 4e-45 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020777
[exp]
479 / 4e-166 AT4G00231 421 / 1e-143 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
Lus10007356
[exp]
476 / 4e-165 AT4G00231 416 / 7e-142 maternal effect embryo arrest 50, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.014G074900.1 pacid=42764430 polypeptide=Potri.014G074900.1.p locus=Potri.014G074900 ID=Potri.014G074900.1.v4.1 annot-version=v4.1
ATGGGTGGTGCATCATTGACAGAGCTATCATTTCCACAAAACGATTTCCTTGAGCCATTGTTTACTGCTTCAAAATCGTCTGATTTGAAAGAAACATTAG
AGATTCTGATAGCAATAGCTAAAACCGATGATGGTCGTGCAGACCTTGCTTCCAAAAACATTCTCCCGGTTGTCCTTCAGCTTATCACCCATCTACTAAA
TGATCCCTTTGATCATGAATATCTCTCACTCTCTTTAAGACTCATGAGAAACTTATGTGCAGGAGAAGTTGCAAACCAGAAGTCTTTTATTCAATTGAAT
GGAGTTGGGATTTTTTTGACAGTTTTGAGGTCTAAAAAGGTTGCTTCTTCTGAACCAGATCATGGGATTATTCGAATGGGCTTACAGGTTTTGGCGAATG
TTTCTTTGGCTGGGAAAGAACACCAACAAGCTATTTGGGGTGGATTGTTCCATGATGAGTTATATATGCTTGCAAAAGTTCGGAGTCAGGGGACTTGTGA
TCCTCTGTGTATGATTATTTATGCCTGTTGTGATGGAAGCCCTGAATTAGTTTTGCAGCTTTGCGGGAATCAAGGGTTGCCTATTGTTGTTGAAATTATA
CGAACTGCATCTTTAGTTGGTTTTGGAGAAGAGTGGCTGAAGTTGCTTCTCTCGAGGATTTGTTTAGAGGATATTTACTTCCCTCAACTCTTCTCAAGAA
TATATAGTGTTTGTAGTTATTGTGAAAATGGAGAGGAAATTAGTTTAAGCAGCAATCCATTTTTTACTGAACAAGCATATCTTTTAAATATCGTGTCAGA
GATTTTGAATGAGCGACTGAAGGAGATTACCATTCTCAATGATTTTGCTTTGTGCATTTTTGGAATATTCAAGAAATCAGTTGAAGCTTTTGAGTTTGGT
TCTAGAGCTGAATCTAGGCTCCCGACCGGGTTTGCTGTTATTGATGTCCTTGGTTACTCACTCACCATTTTAAGAGATATATGTGCTAACAATGGTGGAG
TTGGCAAAGAAGATTTGGTAGATGTTGTTGATTCACTCTTGTCATCTGGACTGCTTGATTTGCTCTTATGCCTGCTTCGTGATCTAGAGCCTCCAAAAAT
AATCAGGAAAGCCATGAATCAGGCTGGTAACCAAGAAGCAACCACTTCTTACTTCCCTAAAGTCTGTCCTTATAAAGGATTTCGGAGAGACTTAGTTGCT
GTCATTGGCAATTGTGCTTACCGAAGAAAGCATGTGCAAGATGACATTAGGCAGAAGAATGGGATGCTTCTAATGTTGCAACAGTGTGTTACAGATGAAG
ATAACCCATTTTTGAGGGAGTGGGGCATATGGTCGATGAGGAACTTATTGGAAGGGAATTCAGAAAACCAACAGGCAGTCGCTGAATTGGAGCTTCAAGG
GTCAGTTGATATGCCTGAACTAGCTGGACTTGGTCTCAAAGTGGAGGTGGATCAAAATACTCGGAGTGCAAAGCTTGTTAATATCTCGTGA
AA sequence
>Potri.014G074900.1 pacid=42764430 polypeptide=Potri.014G074900.1.p locus=Potri.014G074900 ID=Potri.014G074900.1.v4.1 annot-version=v4.1
MGGASLTELSFPQNDFLEPLFTASKSSDLKETLEILIAIAKTDDGRADLASKNILPVVLQLITHLLNDPFDHEYLSLSLRLMRNLCAGEVANQKSFIQLN
GVGIFLTVLRSKKVASSEPDHGIIRMGLQVLANVSLAGKEHQQAIWGGLFHDELYMLAKVRSQGTCDPLCMIIYACCDGSPELVLQLCGNQGLPIVVEII
RTASLVGFGEEWLKLLLSRICLEDIYFPQLFSRIYSVCSYCENGEEISLSSNPFFTEQAYLLNIVSEILNERLKEITILNDFALCIFGIFKKSVEAFEFG
SRAESRLPTGFAVIDVLGYSLTILRDICANNGGVGKEDLVDVVDSLLSSGLLDLLLCLLRDLEPPKIIRKAMNQAGNQEATTSYFPKVCPYKGFRRDLVA
VIGNCAYRRKHVQDDIRQKNGMLLMLQQCVTDEDNPFLREWGIWSMRNLLEGNSENQQAVAELELQGSVDMPELAGLGLKVEVDQNTRSAKLVNIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G00231 MEE50 maternal effect embryo arrest ... Potri.014G074900
[exp]
0 1
AT3G44370 Membrane insertion protein, Ox... Potri.009G121800
[exp]
13.85 0.7201
AT4G28760 Protein of unknown function (D... Potri.014G194600
[exp]
14.14 0.7093
Potri.003G039551
[exp]
16.12 0.7274
AT3G15280 unknown protein Potri.001G398300
[exp]
16.73 0.7051
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.006G271400
[exp]
19.18 0.7304
AT5G52545 unknown protein Potri.004G079400
[exp]
19.89 0.7362
Potri.006G276250
[exp]
20.78 0.6666
AT3G49600 SUP32, ATUBP26,... ubiquitin-specific protease 26... Potri.005G179500
[exp]
21.07 0.6986 UBP26.2
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G242500
[exp]
24.18 0.7061
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Potri.007G026900
[exp]
28.58 0.6789

Potri.014G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.