Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00740 964 / 0 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 482 / 2e-164 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 481 / 8e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 475 / 4e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 470 / 1e-159 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00750 468 / 2e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 460 / 2e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 459 / 2e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 452 / 1e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 438 / 5e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137300 [exp] 484 / 2e-164 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 479 / 6e-163 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 473 / 2e-160 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 473 / 3e-160 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 471 / 1e-159 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 470 / 2e-159 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G131400 [exp] 466 / 3e-158 AT1G31850 1026 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G146400 [exp] 466 / 5e-158 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G102400 [exp] 462 / 9e-157 AT1G31850 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000808 [exp] 956 / 0 AT4G00740 985 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041363 [exp] 800 / 0 AT4G00740 830 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018848 [exp] 759 / 0 AT4G00740 751 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 475 / 3e-161 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 475 / 3e-161 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034729 [exp] 473 / 8e-161 AT1G31850 991 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10017357 [exp] 470 / 2e-159 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 469 / 1e-158 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 461 / 3e-156 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 458 / 5e-155 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.014G075300.1 pacid=42764287 polypeptide=Potri.014G075300.1.p locus=Potri.014G075300 ID=Potri.014G075300.1.v4.1 annot-version=v4.1 ATGGGACACCTAAATCTGCCCGCGTCGAAACGAAACCCACGCCAATGGAAACTACTTGATTTAGTAACGGCAACATTCTTCGGTTTAGTCTTCCTTTTTT TCCTTCTAGTCTTCACTCCACTCGGCGACTCTCTTGCCGCTTCAGGCCGCCAAACACTCCTCCGCTCCACCTCTGATCCACGCCAACGCCACCGTCTTGT CGCTTTGATTGAGGCGGGACAAAATGCTCAGCCGATTGAAGCTTGTCCTGCGGACGAAGTAGATCACATGCCTTGTGAAGATCCTAGAAGGAATAGTCAG TTAAGTAGAGAAATGAACTTTTATAGAGAACGTCATTGTCCTCCCGTTGAGGATACTCATCTTTGCTTGATCCCGCCACCTGACGGTTATAAGATTTCTG TCCGATGGCCTCAGAGTTTGCATAAGATATGGCATGCGAATATGCCGCATGATAAAATTGCTGATAGGAAAGGTCATCAAGGATGGATGAAAAAGGAAGG AGAGCACTTCATTTTCCCTGGCGGTGGAACAATGTTTCCAGAGGGTGCTGTACAGTATATTGAGAAGCTCGGGCAATATATCCCTATCAAAGGCGGGGTT TTGAGGACTGCTCTTGATATGGGATGTGGGGTTGCTAGTTGGGGAGGATATTTGCTGAAGGAAGGGATTTTGACTCTCTCATTTGCTCCAAGAGATTCAC ACAAAGCACAGATACAGTTTGCACTGGAGAGAGGGGTTCCGGCATTTGTTGCCATGCTTGGCACTCGGAGACTCCCGTATCCTGCATTTTCATTTGACTT GGTGCATTGCTCCCGATGCTTGATCCCTTTTACAGCTTATAATGCATCTTATTTTATCGAAGTAAATCGGTTGCTTCGTCCTGGAGGATATCTTGTCATT TCTGGACCACCTGTGCAGTGGGCTAAACAAGACAAGGAATGGGCTGATCTCCAGGCTGTGGCAAGAGCATTGTGCTATGAGCTGATCGCTGTGGATGGAA ACACCGTCATATGGAAAAAACCTGCTGGAGATTTATGCCTGCCCAACCAAAATGAATATGGTCTTGAATTGTGCGACGAATCAGATGACCCAAATGATGC ATGGTACTTCAAGTTAAAGAAATGTGTGAGTAGGACTTCAGCTGTGAAGGGGGATTGTACCATTGGGACTATTCCTAAGTGGCCTGATAGGCTAACGAAA GCACCTTCCAGGGCTGTGCACATGAAAAATGGGTTAGATTTGTTTGACGCTGACACACGGCGCTGGGTAAGGAGGGTTGCATACTATAAGAATTCTTTGA ATGTGAAGCTAGGAACTCCAGCCATACGCAATGTCATGGACATGAATGCATTTTTTGGGAGTTTTGCAGCAGCACTCATGCCAGATCCTGTATGGGTGAT GAATGTCGTTCCTGCTCGCAAGCCATCTACGCTTGGTGTAATATATGACCGAGGCCTTATTGGAGTCTACCATGATTGGTGTGAACCTTTCTCAACATAT CCCCGTTCCTATGATCTCATCCATGTAGCAGGCATTGAATCACTACTAAAACTGCCTGGTTCAAGCAAGAACAGGTGCAACCTTGTGGATTTAATGGTGG AGATGGACCGAATATTACGTCCAGAAGGAACAGTCATTATCCGAGATTCTCCTGAAGTTATTGATAAAGTGGCTCGTGTAGCTCTTGCTGTAAGATGGTT GGTTACCATTCACGAGAAAGAGCCAGAATCGAGTGGAAGAGAGAAAATTCTGGTTGCAACAAAAACCTTTTGGAAGCTGCATTGA
AA sequence Show only first row Show all	>Potri.014G075300.1 pacid=42764287 polypeptide=Potri.014G075300.1.p locus=Potri.014G075300 ID=Potri.014G075300.1.v4.1 annot-version=v4.1 MGHLNLPASKRNPRQWKLLDLVTATFFGLVFLFFLLVFTPLGDSLAASGRQTLLRSTSDPRQRHRLVALIEAGQNAQPIEACPADEVDHMPCEDPRRNSQ LSREMNFYRERHCPPVEDTHLCLIPPPDGYKISVRWPQSLHKIWHANMPHDKIADRKGHQGWMKKEGEHFIFPGGGTMFPEGAVQYIEKLGQYIPIKGGV LRTALDMGCGVASWGGYLLKEGILTLSFAPRDSHKAQIQFALERGVPAFVAMLGTRRLPYPAFSFDLVHCSRCLIPFTAYNASYFIEVNRLLRPGGYLVI SGPPVQWAKQDKEWADLQAVARALCYELIAVDGNTVIWKKPAGDLCLPNQNEYGLELCDESDDPNDAWYFKLKKCVSRTSAVKGDCTIGTIPKWPDRLTK APSRAVHMKNGLDLFDADTRRWVRRVAYYKNSLNVKLGTPAIRNVMDMNAFFGSFAAALMPDPVWVMNVVPARKPSTLGVIYDRGLIGVYHDWCEPFSTY PRSYDLIHVAGIESLLKLPGSSKNRCNLVDLMVEMDRILRPEGTVIIRDSPEVIDKVARVALAVRWLVTIHEKEPESSGREKILVATKTFWKLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	0	1
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	4.47	0.8158
AT2G32580			Protein of unknown function (D...		Potri.002G227100 [exp]	6.48	0.7158
AT2G15240			UNC-50 family protein (.1)		Potri.001G300100 [exp]	7.74	0.7889
AT2G38840			Guanylate-binding family prote...		Potri.002G046000 [exp]	8.48	0.8210
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	13.22	0.7782
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	15.62	0.7016
AT3G63460		EMB2221	transducin family protein / WD...		Potri.001G260900 [exp]	17.49	0.8123
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	21.90	0.7743
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	22.22	0.7317	CEF.2
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	28.98	0.7290

Compare expression of checked genes

Potri.014G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.