Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EMB78.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61140 708 / 0 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) AT3G12850 84 / 2e-17 COP9 signalosome complex-related / CSN complex-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154500 [exp] 847 / 0 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.013G020300 [exp] 43 / 0.0004 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036566 [exp] 776 / 0 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10041364 [exp] 773 / 0 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10036805 [exp] 44 / 0.0003 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037125 [exp] 43 / 0.0003 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 43 / 0.0003 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 42 / 0.001 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain CL0020 [poplar] [flax] TPR PF10602 [poplar] [flax] RPN7 26S proteasome subunit RPN7
Representative CDS sequence Show only first row Show all	>Potri.014G075500.1 pacid=42764695 polypeptide=Potri.014G075500.1.p locus=Potri.014G075500 ID=Potri.014G075500.1.v4.1 annot-version=v4.1 ATGGAACCCGACGACGAGATTTACGCCAACGGCGGAGCTGATGTTTCTAACAACCGAAAAAGACCAATCATTAGCAGCGAACAACTCGACATCGAAGCGT ACGCCGGACTGTACACAGGGAGAACAAAAATAACGCGATTGCTGTTTATCGCGGACCGGTGTGGTCAGAATAATAACACGGCGATGAAGATGGAAGCGCT ACGAATGGCATATGAAGAAATCAAGAAAGGAGAGAACACGCAATTGTTTAGAGATGTAGTGCAGAAGATTGATGGGAGGTTGGGTAGTAATTATGGGATG GATAGTGCTTGGTGTGAGATGGTGGATCGGAGAGCTGATCAGAGGAAAGAGAAGCTTGAGAATGAACTTAATGCTTATAGGACAAACCTGATCAAAGAAA GCATAAGAATGGGATATAATGATTTTGGAGATTACTACTATGCTCATGGTTACCTTGCGGATGCTTTTAAAAGTTATGCCCGTACTCGTGATTATTGCAC TACATCAAAGCATGTTATTCATACATGCATGAGTGCAATTCTTGTAAGCATTGAAATGGGCCAATTTACTCATGTCACAAGCTATGTCAGCAAAGCAGAA CAAACAGCAGAAGCTCTTGAACCTCCTACAGTCTCAAAACTACGTTGTGCTGCTGGATTGGCTCATTTGGAGGCTAAAAAATACAAACTCGCTGCTCGTA AGTTCCTGGAAGTAAGTCCTGAATTGGGAAATTCATACAATGAAGTTATTGCACCTCAAGATGTTGCAACATACGGAGGACTTTGTGCCCTTGCAAGTTT TGATCGGACGGAGCTGAAGAGCAAAGTCATAGACAATCCCAACTTCCGTAATTTCTTGGAGTTGGTACCTGAAGTTAGAGAGCTTATTCATGATTTCTAC TCAAGCCATTATGCTTCGTGTCTGGATTACCTGGGAAATCTTAAAGCAAACCTAATGCTTGACATCCATTTGCATGACCATGTCCAGACACTGTATGATC AAATCCGCAACAAAGCTCTCATTCAGTATACACACCCATTCGTGTCTGTTGATCTGCATATGATGGCCAATGCTTTCAAAACAACTGTGGCGGGCTTAGG GAAAGAACTTGAAGCCTTGATTGCTGACAATCAAATACAGGCACGAATTGACTCGCACAACAAAATTCTATATGCACGCCATGCGGATCAAAGGAATGCG ACTTTCCAGCGGGTACTGCAGACAGGCAATGAGTTTGATAGGGATGTTCGAGCAATGCTGCTGAGGGCAAATCTTATCAAGCATGAATACAAGGCTTCTA GGAAACTTTAA
AA sequence Show only first row Show all	>Potri.014G075500.1 pacid=42764695 polypeptide=Potri.014G075500.1.p locus=Potri.014G075500 ID=Potri.014G075500.1.v4.1 annot-version=v4.1 MEPDDEIYANGGADVSNNRKRPIISSEQLDIEAYAGLYTGRTKITRLLFIADRCGQNNNTAMKMEALRMAYEEIKKGENTQLFRDVVQKIDGRLGSNYGM DSAWCEMVDRRADQRKEKLENELNAYRTNLIKESIRMGYNDFGDYYYAHGYLADAFKSYARTRDYCTTSKHVIHTCMSAILVSIEMGQFTHVTSYVSKAE QTAEALEPPTVSKLRCAAGLAHLEAKKYKLAARKFLEVSPELGNSYNEVIAPQDVATYGGLCALASFDRTELKSKVIDNPNFRNFLELVPEVRELIHDFY SSHYASCLDYLGNLKANLMLDIHLHDHVQTLYDQIRNKALIQYTHPFVSVDLHMMANAFKTTVAGLGKELEALIADNQIQARIDSHNKILYARHADQRNA TFQRVLQTGNEFDRDVRAMLLRANLIKHEYKASRKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.014G075500 [exp]	0	1	Pt-EMB78.1
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	3.16	0.9241
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	4.12	0.9304
AT3G05910			Pectinacetylesterase family pr...		Potri.013G000900 [exp]	9.48	0.9189
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.002G072200 [exp]	9.48	0.8992
AT1G14890			Plant invertase/pectin methyle...		Potri.010G109300 [exp]	13.41	0.8947
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	13.74	0.9012
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Potri.008G025600 [exp]	14.31	0.9055
AT2G30890			Cytochrome b561/ferric reducta...		Potri.005G204300 [exp]	14.49	0.8952
AT1G80690			PPPDE putative thiol peptidase...		Potri.001G047800 [exp]	16.43	0.9041
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	16.52	0.8925

Compare expression of checked genes

Potri.014G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.