Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00752 269 / 4e-85 UBX domain-containing protein (.1) AT4G11740 223 / 2e-66 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 184 / 2e-52 Ubiquitin-like superfamily protein (.1) AT4G10790 54 / 1e-07 UBX domain-containing protein (.1) AT2G43210 51 / 1e-06 Ubiquitin-like superfamily protein (.1.2) AT4G14250 43 / 0.0004 structural constituent of ribosome (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122300 [exp] 232 / 1e-69 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1) Potri.001G109500 [exp] 226 / 2e-67 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.015G080200 [exp] 73 / 7e-14 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.017G036600 [exp] 62 / 5e-10 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.003G145200 [exp] 60 / 2e-09 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.001G085600 [exp] 59 / 5e-09 AT4G10790 520 / 0.0 UBX domain-containing protein (.1) Potri.007G123800 [exp] 58 / 9e-09 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.010G098800 [exp] 45 / 6e-05 AT1G14570 554 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.008G142800 [exp] 44 / 0.0003 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041365 [exp] 403 / 6e-137 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 395 / 4e-134 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10029591 [exp] 202 / 2e-58 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 197 / 9e-57 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10027684 [exp] 56 / 3e-08 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10026718 [exp] 52 / 5e-07 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 52 / 5e-07 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10025504 [exp] 51 / 1e-06 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10017317 [exp] 48 / 1e-05 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10003214 [exp] 48 / 1e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0072 [poplar] [flax] PF02809 [poplar] [flax] UIM Ubiquitin interaction motif CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.014G075600.2 pacid=42764758 polypeptide=Potri.014G075600.2.p locus=Potri.014G075600 ID=Potri.014G075600.2.v4.1 annot-version=v4.1 ATGGTGAGGCCAACTCAGGATACGATCGAGACATTCATGAGAATCACCGGCGCGTCTGATTCACTCGCGGTTCGAAAGTTGGAGGAATATGGAGGCAATC TTGATCAGGCTGTGAATGCTCATTTTATTGAATTGGAAGCAAACGCGAGAAATCAATTGTCTGCTGCTTCCCCTCAAAATAACTTTGCTGATACGAGAAA TCAAATGCAATCTGGACAGCGTGGGATTTTACCTTTCGTATCTGCTGCTAGAAGTTTTAGGCCTTCATTACTTCTTGATCCTAACTATAGGAGAAATCTG TACAGCCAAATTGGTGCTTCTGTTTTCCCTACTAGTAGGGGACCACAGTTTTCACCCAATGGTGAGATTAATAATGGCCATGGGCAGCTTTATCATTCCG GACCGGGGCATGGAGTTGGTGGTGTGAGTGGAACTTCATTAACACACGGCTCACAAATTCATGGAAGGAGCACAAGGGATGCTGAATCACATCATTATGG TGATGATGTTGAGGAAGAGATGATCCAGATGGCCATTGAGGCTTCAACCCAGGAGGGGCAGCTTCACGTGGAAGACGATGAGTTTGCTCGTGCACTAGAG TTGTCCTTGAAGACAGCAGAACAAGAAAAAGCAATGCGTGATCAGACGTTGGAAGATCGAAAACTACAGGGAGTTCATGGTTCAAGCAGAAGGGCTGAGA AAACTAATCATGTAAGAGAGAAAAAGTCAAAGCCTGAGAGCTCAACATTGAAAGCGAGAGCTAAACATGGGCAAGAGCAGCAATTGTGGGGTTGCATTTC TTCCAAGGAGTTTGATGAAGCGATGCAGCTTGAGGAGGCACTTTTTGGTGAAATCCCTGAAGAGACTTTATCACGACGTCCACTTCGCCAGCAAGGTGTT CCGGACAAAAGTAAAGGTCTCAATCAACAGCTCCCTTTGCCATCACCCTCACATGTGGCTCAGCAATTACTAAACCAACAGAATGATGAGTATCTTGCGT CTCTGTTGGCTGATGGAGAAAAAGATGTTGATGTCCTCAAGGGAGCTGAAACTTCTTGCTCAAAGGAAGGAGAATCTCAAAATAAGATGCTTCAAGGAGA GGAATTTGAGAGATTACTAGCAGCAAAAGAAGCTTCACTTAAACAAGAACCTGCTCCAGATGACAAGAATGCAGTAAATCTTCTTGTCCGTATGCCAGAT GGAAACCGCCATGGCCGTCGCTTTCTTAAGTCTGACAAGCTTCAGTTACTTTTTGACTTCATCGATGTTGGTAGAGCTGTGAAGCCTGGAACTTACAGGG TGGTGAGGCCGTATCCCAGGCGTGCGTTTTCTGTCAGTGACATCTCTCTAAGTTTGAACGAACTCGGTCTCACCAACAAACAGGAAGCGTTGTTTCTGGA ATTGATTTAG
AA sequence Show only first row Show all	>Potri.014G075600.2 pacid=42764758 polypeptide=Potri.014G075600.2.p locus=Potri.014G075600 ID=Potri.014G075600.2.v4.1 annot-version=v4.1 MVRPTQDTIETFMRITGASDSLAVRKLEEYGGNLDQAVNAHFIELEANARNQLSAASPQNNFADTRNQMQSGQRGILPFVSAARSFRPSLLLDPNYRRNL YSQIGASVFPTSRGPQFSPNGEINNGHGQLYHSGPGHGVGGVSGTSLTHGSQIHGRSTRDAESHHYGDDVEEEMIQMAIEASTQEGQLHVEDDEFARALE LSLKTAEQEKAMRDQTLEDRKLQGVHGSSRRAEKTNHVREKKSKPESSTLKARAKHGQEQQLWGCISSKEFDEAMQLEEALFGEIPEETLSRRPLRQQGV PDKSKGLNQQLPLPSPSHVAQQLLNQQNDEYLASLLADGEKDVDVLKGAETSCSKEGESQNKMLQGEEFERLLAAKEASLKQEPAPDDKNAVNLLVRMPD GNRHGRRFLKSDKLQLLFDFIDVGRAVKPGTYRVVRPYPRRAFSVSDISLSLNELGLTNKQEALFLELI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	0	1
AT5G53880			unknown protein		Potri.001G398700 [exp]	1.00	0.9083
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	1.73	0.8823
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	2.44	0.8911
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	5.47	0.8694
AT5G56230		PRA1.G2	prenylated RAB acceptor 1.G2 (...		Potri.001G472300 [exp]	5.56	0.8158
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	6.48	0.8605
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	6.63	0.8798
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.015G062800 [exp]	7.34	0.8664
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.006G071500 [exp]	8.60	0.8124
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	10.19	0.8005

Compare expression of checked genes

Potri.014G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.