Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 106 / 1e-25 NAC ANAC071 NAC domain containing protein 71 (.1) AT1G33060 110 / 2e-25 NAC ANAC014 NAC 014 (.1.2) AT5G46590 101 / 1e-23 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G35580 103 / 2e-23 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT3G03200 103 / 2e-23 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G39610 99 / 6e-23 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT5G17260 100 / 1e-22 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G29035 99 / 1e-22 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT1G65910 100 / 3e-22 NAC ANAC028 NAC domain containing protein 28 (.1) AT2G24430 97 / 7e-22 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076100 [exp] 928 / 0 AT4G17980 103 / 2e-24 NAC domain containing protein 71 (.1) Potri.002G154100 [exp] 429 / 6e-144 AT1G33060 136 / 2e-33 NAC 014 (.1.2) Potri.002G154000 [exp] 297 / 2e-95 AT1G33060 154 / 1e-40 NAC 014 (.1.2) Potri.002G182400 [exp] 222 / 1e-65 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G108100 [exp] 133 / 1e-34 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.014G107700 [exp] 105 / 3e-25 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.011G149300 [exp] 109 / 4e-25 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.014G076000 [exp] 100 / 2e-24 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 99 / 2e-23 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010148 [exp] 105 / 6e-24 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10035373 [exp] 100 / 1e-22 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10033251 [exp] 101 / 2e-22 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10009029 [exp] 99 / 2e-22 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10026879 [exp] 99 / 2e-22 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10008285 [exp] 100 / 3e-22 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10038937 [exp] 97 / 3e-22 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10003435 [exp] 98 / 6e-22 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10015076 [exp] 97 / 7e-22 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 97 / 9e-22 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.014G075901.1 pacid=42762869 polypeptide=Potri.014G075901.1.p locus=Potri.014G075901 ID=Potri.014G075901.1.v4.1 annot-version=v4.1 ATGGACGACTATTTCTCATCAGTCCTGGCAATCTTACTGCTATTAATGGAAAAAGGATTCAAATTTCAGCCAAGTAATGAAGAATTAATAAGCAAGTATC TGGTGCCGAAAACCCGTGGTGATATCATGGAAGGCTTGCCCATGGCAGTCGTTAACCTTTGCGAGCATGAGCCATGGGATCTACCTGGTAAATCCATTAT AAAGTTAGCTGGTCAAGTAACGTGGTATTTCTTATGCCCTCGCGATCTTAGGGGCAAAGTTCACCGCAGAAAAACCAAGGCTGGATACTGGAAACTGACC TGCCAGCAAAAGTCAATAACGGCTGAGGGTACTACGACAAAGATTGGGGTAATGAGGACTTTGAGATTCTATGAAAACGAAGTGAGGACTGGTTGGATGA TGTACGAATTTGACCTCATCACCAATTCTAGCCAGTTTAAAAAGGGGCAATATGTTCTCTGTAAACTGGAGATTAATTCAAAAGGCGAGAAGAGCAAGAA AGGTGAACAAAGCCACCATATAGCTCCAGTCTCCCATTCTGAAGTGGAACCAAGTCAGAGTACGGATTCTGATTCTGAAAATATAAACCCAAGTGAGATG GCTATGAGATATTCACCTTGTGATGAAAGTGAATTAAGCCATCATGCGGGTTCCCATTTTGGAAATCAAAATCCGAGTGAGCTGATGAATAATTCAGCTC GCCAACTTAGTGAGTTAAGCCACCATATGGCTTCTGATTCTGAAAATAACCTAATGCCTAATTTAGTTTATGATGGAAGTGGGTCAAGCCACTCCACGGT TTTTAATTGTGAAGAACTATACTGGAATCAGCCTACAGTTGATTCAGCTTATAGCCCTTACATGGCTTTCGATTCTGAAAATCAAAACCCAAATGAGATC CTGACAGTTGATAATTCAGCTTCTAATGTCAGCAGAAACGATGGCATGGCTTTTGGTTTGGCAAATCATAACCCGAATGTATCGCTGACAGTTGATAATT CAACTTCTAATGTCAGTGAAAGTCATCATATGGCTTTAGTTTTGGAAAATCAAAATCTAAACAATAGCCTTTCTATATTAACTTGTGAGAATTCTTTAAT GGCTTCTCGTGGTTTGGAAAATCAAGAACCATTCTTTCCACCTTGTAGTTTTATAAACCAGTCAACGTATGACAAGAGTGAATCAAGTAGCCTAATGGAT TTTGATTTTGAAAACCAAAATCTAGTAAAGGAATTCGATATATCAGCCTTCGGTGAAGGTGTATGGAGTAATACCACAGCAACTCCTCCGGAATTTTTAA ATCAAAATCCTTGTAAGAAGACTGATATGTCAACCCTTGAAGAAGGTTATTCGAGTTACTTTAAGTCCTCTTTTTCAGATAATGATCTACCTGATGTTGC GCTTCCAGAGCAGGTAAGCCCTGGACTACAAGCAGGGATAGAAGGGTGTTTCGAGCAAGAAAACAGCCCCAACCCTGCACTTGTCCAGCTTCCTGCGTGC ATGGAGGAAAGCCACTCCTTCATGGGCTTTGGTACCTTGGTATCTAATTGA
AA sequence Show only first row Show all	>Potri.014G075901.1 pacid=42762869 polypeptide=Potri.014G075901.1.p locus=Potri.014G075901 ID=Potri.014G075901.1.v4.1 annot-version=v4.1 MDDYFSSVLAILLLLMEKGFKFQPSNEELISKYLVPKTRGDIMEGLPMAVVNLCEHEPWDLPGKSIIKLAGQVTWYFLCPRDLRGKVHRRKTKAGYWKLT CQQKSITAEGTTTKIGVMRTLRFYENEVRTGWMMYEFDLITNSSQFKKGQYVLCKLEINSKGEKSKKGEQSHHIAPVSHSEVEPSQSTDSDSENINPSEM AMRYSPCDESELSHHAGSHFGNQNPSELMNNSARQLSELSHHMASDSENNLMPNLVYDGSGSSHSTVFNCEELYWNQPTVDSAYSPYMAFDSENQNPNEI LTVDNSASNVSRNDGMAFGLANHNPNVSLTVDNSTSNVSESHHMALVLENQNLNNSLSILTCENSLMASRGLENQEPFFPPCSFINQSTYDKSESSSLMD FDFENQNLVKEFDISAFGEGVWSNTTATPPEFLNQNPCKKTDMSTLEEGYSSYFKSSFSDNDLPDVALPEQVSPGLQAGIEGCFEQENSPNPALVQLPAC MEESHSFMGFGTLVSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	0	1
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	5.47	0.7948
AT5G36930			Disease resistance protein (TI...		Potri.003G014200 [exp]	6.48	0.8399
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	12.96	0.8082
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	13.74	0.7713
AT3G24110			Calcium-binding EF-hand family...		Potri.001G314900 [exp]	18.92	0.6575
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	19.44	0.7468
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.007G005700 [exp]	21.21	0.7297
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G076100 [exp]	22.75	0.6968
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	24.12	0.7915
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Potri.001G342600 [exp]	25.90	0.7029

Compare expression of checked genes

Potri.014G075901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.