Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 103 / 3e-24 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G24590 103 / 6e-23 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT1G33060 104 / 8e-23 NAC ANAC014 NAC 014 (.1.2) AT5G46590 100 / 8e-23 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G35580 101 / 3e-22 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT3G03200 100 / 6e-22 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G49530 100 / 7e-22 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G17260 99 / 2e-21 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G29035 97 / 2e-21 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT5G39610 95 / 3e-21 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075901 [exp] 919 / 0 AT4G17980 106 / 1e-25 NAC domain containing protein 71 (.1) Potri.002G154100 [exp] 394 / 3e-125 AT1G33060 136 / 2e-33 NAC 014 (.1.2) Potri.002G154000 [exp] 315 / 7e-98 AT1G33060 154 / 1e-40 NAC 014 (.1.2) Potri.002G182400 [exp] 246 / 2e-71 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.014G108100 [exp] 134 / 4e-34 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1) Potri.014G107700 [exp] 102 / 5e-24 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.005G058900 [exp] 104 / 1e-23 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.012G007500 [exp] 105 / 3e-23 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.014G107900 [exp] 98 / 1e-22 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010148 [exp] 106 / 2e-23 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 99 / 5e-21 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10020896 [exp] 96 / 1e-20 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10038937 [exp] 94 / 1e-20 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10008285 [exp] 97 / 2e-20 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10020165 [exp] 95 / 2e-20 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10035373 [exp] 94 / 2e-20 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10027227 [exp] 92 / 4e-20 AT3G18400 275 / 1e-91 NAC domain containing protein 58 (.1) Lus10015076 [exp] 93 / 8e-20 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10009029 [exp] 92 / 8e-20 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.014G076100.4 pacid=42762976 polypeptide=Potri.014G076100.4.p locus=Potri.014G076100 ID=Potri.014G076100.4.v4.1 annot-version=v4.1 ATGGACGACTATTTCTCATCAGTCCTGCCAATCTTACTGCTATTAATGGAACAAGGATTCAAATTTGATCCATCCGATGAAGAATTAATAAGGAAGTATC TGGTGCCGAAAACCCGTGGTGATATCATGAGAGGCTTGCCCATGGCAGTCGTTAACCTATGCGAGCATGAGCCATGGGATCTACCTGGTAAATCCATTAT AAAGTTAACCGGTCAAGTAGCGTGGTATTTCTTATGCCCTCGCGATCTTAGGGGCAAAGTTCACCGCAGAAAAACCAAGGCCGGATACTGGAAACCGACC AGCCAGCAAAAGTCAATAACGGCTGAGCATACTAATAAAAAGATTGGGGTAGTGAGGACTTTGAGATTCTATGAAAAACAAGTGAGGACTGGTTGGATGA TATACGAATTTGACCTCATCGCCGAATCTAGCCAGTTTAAAAAGGGGCAATTTGTTCTCTGTAAACTGGAGTTTGATTCAAAAGGAGAGAAGAGCAAGAA AGGTGAACAAAGCCACCATATAGCTCCAGTCTCCCATTCTGAAGTTGAACCAAGTCAGAGTATGGATTCTGATTCTGAAAATATAAACCCAAGTGAGATG GCTATGAGATATTCACCTTGTGATGAAAGTGAATTAAGCCATCATGCGGGTTCCCATTTTGGAAATCAAAATCCAAGTGAGCTGATGAATAATTCAGCTC GCCAACTTAGTGAGTTAAGCCACCATATGGCTTCTGATTCTGAAAATAACCTAATGCCTAATTTAGTTTATGATGGAAGTGGGTCAAGCCACTCCACGGT TTTTAATTGTGAAGATCTTTACTGGAATCAGCCTACAGTTGATTCAGCTTATAATGGAAGCGAAAGCCTTTACATGGCTTTCGATTCTGAAAATCAAAAC CCAAATGAGCTCCCGACAGTTGATAATTCAGCTTCTAATGTCAGCAAAAACCATGGCATGGCTTTTGGTTTGGCAAATCATAACCCGAATGTATCGCTGA CAGTTGATAATTCAACTTCTAATGTCAGTGAAAGTCATCATATGGCTTTAGTTTTGGAAAATCAAAATCTAAACAATAGCATTTCTATATTAACTTGTGA GAATTCTTTAATGGCTTCTCGTGGTTTGGAAAATCAAGAACCATTCTTTCCACCTTGTAGTCTTATAAACCAGTCAACGTATGATAAGAGTGAATCAAGT AGCCTAATGGATTTTGATTTTGAAAATCAAAATCTAGTAAAGGAATTCGATATATCAGCCTTCTGTGAAGGTGTATGGAGTAATACCACAGCAACTCCTC CGGATTTTGGAAATCAAAATCCTTGTAAGAAGACTGATATGTCAACCCTTGAAGAAGGTTATTCGAGTTACTTTAACTCCTCTTCTTCAGATAATGATCT AGCTGATGTGGCGCTTCCAGAGCAGGTAAGCCCTGGACTACAAGCAGAGATAGAAGGGTGTTTCGAGCAAGAAAACATCCCCAACCCTGCACTTGTCCAG CTTCCTGCGTACATGGAGGAAAGCCACTCCTTCAGGGGCTTTGGTACCTTGGAAAATCAAGAACCATTCTTTTCACCTCGTAGTTTTATAAACCAGTCAA CGTATGATAAGAGTGAATCAAGTAGCCTAATGAACTTTGATTTTGGAAATCAAAATCTAGTAAAGGAATTCGATATATCAGCCTTCGGTGAAGGTGTATG GAGTAATACCACAGCAACTCCTCCGGATTTTGGAAATCAAAATCCTTGTAAGAAGACTGATATGTCAACCCTTGAAGAAGGTTATTCGAGTTACTTTAAC TCCTCTTCTTCAGATAATGATCTAGCTGATGTGGCGCTTCCAGAGCAGGTAAGCCCTGGACCACAAGCAGAGATAGAAGGGTGTTTCGAGCAAGAAAACA TCCCCAACCCTGCACTTGTCCAGCTTCCTGCGTGCATGGAGGAAAGCCACTCCTTCAGGGGCTTTGGTACCTTGGAAAATCAAGAACCATTCTTTCCATC TTGTAGTTTTATAAACCAGTCAACGTATGATAAGAGTGAATCAAGTAGCCTAATGAACTTTGATTTTGGAAATCAAAATCTAGTAAAGGAATTCGATATA TCAGCCTTCGGTGAAGGTGTATGGAGTAATACCACAGCAACTCCTCCGGATTTTGGAAATCAAAATCCTTGTAAGAAGACTGATATGTCAACCCCTGAAG AAGGTTATTCGAGTTACTTTAACTCCTCTTCTTCAGATAATGATCTAGCTGATGTGGCGCATCCAGAGCAGGTAAGCCCTGGACTACAAGCAGAGATAGA AGGGTGTTTCGAGCAAGAAAACATCCCCAACCCTGCACTTGTCCAGCTTCCTGCGTACATGGAGGAAAGCCACTCCTTCAGGGGCTTTGGTACCTTGGAA AATCAAGAACCATTCTTTCCACCTTGTAGTTTTATAAACCAGTCAACGTATGATAAGAGTGAATCAAGTAGCCTAATGAACTTTGATTTTGGAAATCAAA ATCTAGTAAAGGAATTCGATATATCAGCCTTCGGTGAAGGTGTATGGAGTAATACCACAGCAACTCCTCCGGATTTTGGAAATCAAAATCCTTGTAAGAA GTCTGATATGTCAACCCTTGAAGAAGGTTATTCGAGTTACTTTAACTCCTCTTCTTCAGATAATGATCTAGCTGATGTGGCGCTTCCAGAGCAGGTAAGC CCTGGACCACAAGCAGAGATAGAAGGGTGTTTCGAGCAAGAAAACATCCCCAACCCTACACTTGTCCAGCTTCCTTTTCTGGGGTTCGAGTAG
AA sequence Show only first row Show all	>Potri.014G076100.4 pacid=42762976 polypeptide=Potri.014G076100.4.p locus=Potri.014G076100 ID=Potri.014G076100.4.v4.1 annot-version=v4.1 MDDYFSSVLPILLLLMEQGFKFDPSDEELIRKYLVPKTRGDIMRGLPMAVVNLCEHEPWDLPGKSIIKLTGQVAWYFLCPRDLRGKVHRRKTKAGYWKPT SQQKSITAEHTNKKIGVVRTLRFYEKQVRTGWMIYEFDLIAESSQFKKGQFVLCKLEFDSKGEKSKKGEQSHHIAPVSHSEVEPSQSMDSDSENINPSEM AMRYSPCDESELSHHAGSHFGNQNPSELMNNSARQLSELSHHMASDSENNLMPNLVYDGSGSSHSTVFNCEDLYWNQPTVDSAYNGSESLYMAFDSENQN PNELPTVDNSASNVSKNHGMAFGLANHNPNVSLTVDNSTSNVSESHHMALVLENQNLNNSISILTCENSLMASRGLENQEPFFPPCSLINQSTYDKSESS SLMDFDFENQNLVKEFDISAFCEGVWSNTTATPPDFGNQNPCKKTDMSTLEEGYSSYFNSSSSDNDLADVALPEQVSPGLQAEIEGCFEQENIPNPALVQ LPAYMEESHSFRGFGTLENQEPFFSPRSFINQSTYDKSESSSLMNFDFGNQNLVKEFDISAFGEGVWSNTTATPPDFGNQNPCKKTDMSTLEEGYSSYFN SSSSDNDLADVALPEQVSPGPQAEIEGCFEQENIPNPALVQLPACMEESHSFRGFGTLENQEPFFPSCSFINQSTYDKSESSSLMNFDFGNQNLVKEFDI SAFGEGVWSNTTATPPDFGNQNPCKKTDMSTPEEGYSSYFNSSSSDNDLADVAHPEQVSPGLQAEIEGCFEQENIPNPALVQLPAYMEESHSFRGFGTLE NQEPFFPPCSFINQSTYDKSESSSLMNFDFGNQNLVKEFDISAFGEGVWSNTTATPPDFGNQNPCKKSDMSTLEEGYSSYFNSSSSDNDLADVALPEQVS PGPQAEIEGCFEQENIPNPTLVQLPFLGFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G076100 [exp]	0	1
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	7.48	0.7074
AT4G12390		PME1	pectin methylesterase inhibito...		Potri.003G113700 [exp]	9.89	0.7590
AT3G49990			unknown protein		Potri.002G028100 [exp]	16.73	0.6358
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.018G111400 [exp]	19.82	0.7076
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	20.17	0.6793
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	22.75	0.6968
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Potri.001G197000 [exp]	26.45	0.6424
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154000 [exp]	26.60	0.6969	NAC101
AT5G67620			unknown protein		Potri.007G005600 [exp]	27.11	0.7013
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	32.86	0.6334

Compare expression of checked genes

Potri.014G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.