Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00755 352 / 5e-120 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153900 [exp] 551 / 0 AT4G00755 311 / 3e-104 F-box family protein (.1.2) Potri.014G076200 [exp] 149 / 3e-44 AT4G00755 95 / 6e-24 F-box family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036561 [exp] 388 / 4e-134 AT4G00755 323 / 5e-109 F-box family protein (.1.2) Lus10041367 [exp] 375 / 4e-129 AT4G00755 306 / 4e-102 F-box family protein (.1.2) Lus10015001 [exp] 315 / 3e-105 AT4G00755 273 / 8e-89 F-box family protein (.1.2) Lus10038879 [exp] 197 / 9e-61 AT4G00755 142 / 9e-40 F-box family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.014G076300.7 pacid=42762583 polypeptide=Potri.014G076300.7.p locus=Potri.014G076300 ID=Potri.014G076300.7.v4.1 annot-version=v4.1 ATGGAGATCCGTATGGATTTCTTGAATTGTCTTGACCATGACACATCAATGAAGATTCTCAGGTGTTTGGAAGATCCATCTGATCTTGTCCGTGCTAGTT ATGTCTCTCGTTCTTGGCGAGATTTTGTGATTGCAAATGGTCTTTGTAAGCAGCTGTGCTTGAGTATGTTTCCTCACTTGCTTAGAGTTGATTGTGTAAT TGAACCTAGCTGTGTTATGGAAAAAGCTTCAGAAGTCGGATGTAGCAAATTTGTGGAATGGGAAACTCTGAAGAGGGAGCATAAAGCATATGCATTTCTA GCTCAAGCGTGCTTGTCATTTCCTTTTGATGATTGCATTAAGGATGCAATAAGTGCTTCTAGCACTGATAATTATCCAGAGGAAAGCATTCGTAACACTC TGCAAAAAGGGGACCGTGTTGGAAGGAGACCTTCGTACTGGTCAAGTAAAGGACAGCGTAAGGCTGCAGTACCTGAGACACTAGTGTATAAACTGGTTGC TGATATTTGTGTTATTACTGAAATTAATATACAACCTTTTCAAGCTTATTTTCAGCAGGGTTCACCTATATATTCGGCAGAATCTGTGCGGTTTCATTTG GGTCATCCCAAGTGCCCAATGGATGATACTTTGGGTGAACCATTGGATAACTGTGCTGATGACAAGTTCATATGGACTTACTCTTCACCAGAGTTTCCAA TGGCCCAGGAGAGGAGCTTGCAGAACTTCAAGCTTCCAGAACCTGTTGTTTGCATTGGTGGAATTTTGCAGATTGAGCTGTTGAGAAGGGTTCAGAGGCA AGAAATGGATGGCTTGTTCTATATATGCGTGGCTCATGTTCAAGTTAAAGGCAGGCCATTATCATCAGCATTTGGTGTTGAAATCCTTGGACCTTCTGGA AAGTTTGTATTGAAAACCCTGAGTAGTGCACCACGAAGTTCACTACCACCAAGTTTACCTGAAGATGACGCCTTATATCATGGTGTGCCCTTGCAAGGAC TTGCTGATTTGGAGCAGGTTGTGAATGGGTTGGGGGTCGAAGTACTAGATGAAGATTGGAACTCAGAAGATGATGAAGCGGCCGATGAAATGGATGATGA GTTAGCTTTCTAG
AA sequence Show only first row Show all	>Potri.014G076300.7 pacid=42762583 polypeptide=Potri.014G076300.7.p locus=Potri.014G076300 ID=Potri.014G076300.7.v4.1 annot-version=v4.1 MEIRMDFLNCLDHDTSMKILRCLEDPSDLVRASYVSRSWRDFVIANGLCKQLCLSMFPHLLRVDCVIEPSCVMEKASEVGCSKFVEWETLKREHKAYAFL AQACLSFPFDDCIKDAISASSTDNYPEESIRNTLQKGDRVGRRPSYWSSKGQRKAAVPETLVYKLVADICVITEINIQPFQAYFQQGSPIYSAESVRFHL GHPKCPMDDTLGEPLDNCADDKFIWTYSSPEFPMAQERSLQNFKLPEPVVCIGGILQIELLRRVQRQEMDGLFYICVAHVQVKGRPLSSAFGVEILGPSG KFVLKTLSSAPRSSLPPSLPEDDALYHGVPLQGLADLEQVVNGLGVEVLDEDWNSEDDEAADEMDDELAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00755			F-box family protein (.1.2)		Potri.014G076300 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.019G053300 [exp]	1.41	0.9024
AT3G52790			peptidoglycan-binding LysM dom...		Potri.008G030200 [exp]	4.24	0.8924
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.009G095800 [exp]	4.69	0.8649	CAD,Pt-CAD4.1
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	5.47	0.8701
AT5G01430			Got1/Sft2-like vescicle transp...		Potri.007G124400 [exp]	6.92	0.8671
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132700 [exp]	7.74	0.8660
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	8.71	0.8303
AT4G27880			Protein with RING/U-box and TR...		Potri.012G015500 [exp]	10.95	0.8894	SINAT4.2
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	12.00	0.8818
AT5G43150			unknown protein		Potri.008G152200 [exp]	12.48	0.8632

Compare expression of checked genes

Potri.014G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.