Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20030 86 / 1e-19 RING/U-box superfamily protein (.1) AT4G17905 84 / 2e-19 ATL4H RING/U-box superfamily protein (.1) AT4G10150 83 / 2e-19 RING/U-box superfamily protein (.1) AT4G10160 82 / 3e-19 RING/U-box superfamily protein (.1) AT2G46160 81 / 7e-19 RING/U-box superfamily protein (.1) AT4G33565 83 / 9e-19 RING/U-box superfamily protein (.1) AT1G20823 80 / 1e-18 RING/U-box superfamily protein (.1) AT4G28890 83 / 2e-18 RING/U-box superfamily protein (.1) AT5G05810 82 / 2e-18 ATL43 RING/U-box superfamily protein (.1) AT1G33480 80 / 5e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G153400 [exp] 360 / 1e-128 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.010G235200 [exp] 171 / 9e-54 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.008G025300 [exp] 162 / 2e-50 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 86 / 2e-20 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 87 / 5e-20 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 86 / 1e-19 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 86 / 1e-19 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 82 / 1e-19 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 84 / 3e-19 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043426 [exp] 152 / 5e-46 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 151 / 6e-46 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10012975 [exp] 87 / 4e-20 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 87 / 5e-20 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10009511 [exp] 85 / 2e-19 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 83 / 1e-18 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10013618 [exp] 82 / 1e-18 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10041079 [exp] 81 / 2e-18 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10023086 [exp] 82 / 3e-18 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10033515 [exp] 80 / 3e-18 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.014G076800.2 pacid=42762432 polypeptide=Potri.014G076800.2.p locus=Potri.014G076800 ID=Potri.014G076800.2.v4.1 annot-version=v4.1 ATGTTTGATGCAGCTATGAATTTAACCACTACAGTTATTGGTTTTGGTATGAGTGTTACTTTTATTGTGTTTGTCTGTACAAGAATTATATGTGGGAGGC TAAGAGGGGCCGAGTCCAGGCAAATGCTTGAAATTGAGTCCAGAATCGATATTGAACAGCCAGAGCATGGGATTAGTGGCCTTGAACCAGTTCTAGTTGC TGCAATCCCCACTTTACGGTTCACACGTGAGGCGTTCAGTTCTGCAGAAGATGCACAGTGTTCGATATGTTTAGGGGAATACCAAGAAAAGGAAGTGTTG AGGATCATGCCCAAATGTGGTCACAACTTTCACCTCTCTTGCATCGACGAATGGCTAAGAAAACACTCTACGTGCCCAGTCTGTCGGTTCCAAATACAAG ACTCTTTCAAAGCAAAGCACATGAGACAGGCTGCAATTAGCATGGTCCAATCAATTGACAGTCCTGATACTCCAAGTGAACATTCTAGGCAATGGCTGCT ACCCAGCTATCAGCATCAAGCGGGGAACCACAGTAATCAAAGGCATCTTGACCCTGTTCCTGGAAACTCAGAAATTACTCCTGGAGAACCCCAAACAAGC CATTCGTGA
AA sequence Show only first row Show all	>Potri.014G076800.2 pacid=42762432 polypeptide=Potri.014G076800.2.p locus=Potri.014G076800 ID=Potri.014G076800.2.v4.1 annot-version=v4.1 MFDAAMNLTTTVIGFGMSVTFIVFVCTRIICGRLRGAESRQMLEIESRIDIEQPEHGISGLEPVLVAAIPTLRFTREAFSSAEDAQCSICLGEYQEKEVL RIMPKCGHNFHLSCIDEWLRKHSTCPVCRFQIQDSFKAKHMRQAAISMVQSIDSPDTPSEHSRQWLLPSYQHQAGNHSNQRHLDPVPGNSEITPGEPQTS HS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	0	1
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	2.00	0.9536
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	2.44	0.9550
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Potri.018G131700 [exp]	2.82	0.9320
AT5G02420			unknown protein		Potri.008G029600 [exp]	5.91	0.8846
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	6.24	0.8807
					Potri.001G410477 [exp]	7.41	0.9395
AT4G27745			Yippee family putative zinc-bi...		Potri.015G009200 [exp]	7.74	0.9108
AT2G46550			unknown protein		Potri.005G071400 [exp]	8.66	0.9167
AT4G10030			alpha/beta-Hydrolases superfam...		Potri.019G074600 [exp]	8.77	0.9346
					Potri.005G084651 [exp]	9.38	0.9452

Compare expression of checked genes

Potri.014G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.