Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01880 667 / 0 5'-3' exonuclease family protein (.1.2) AT3G48900 117 / 1e-27 single-stranded DNA endonuclease family protein (.1.2) AT3G28030 105 / 4e-23 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT5G26680 79 / 2e-15 5'-3' exonuclease family protein (.1.2) AT1G29630 52 / 8e-07 5'-3' exonuclease family protein (.1.2.3) AT1G18090 49 / 1e-05 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152801 [exp] 313 / 1e-101 AT1G01880 190 / 7e-55 5'-3' exonuclease family protein (.1.2) Potri.015G142800 [exp] 108 / 8e-25 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Potri.017G070500 [exp] 104 / 8e-23 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.013G000700 [exp] 83 / 8e-17 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 44 / 0.0004 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041375 [exp] 792 / 0 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 754 / 0 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 122 / 4e-29 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10027451 [exp] 117 / 1e-27 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039424 [exp] 105 / 2e-23 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10000270 [exp] 75 / 3e-14 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 63 / 9e-11 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10027250 [exp] 46 / 8e-05 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10004608 [exp] 46 / 9e-05 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 45 / 0.0003 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF00752 [poplar] [flax] XPG_N XPG N-terminal domain CL0464 [poplar] [flax] 5_3_exonuc_C PF00867 [poplar] [flax] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Potri.014G077300.1 pacid=42763799 polypeptide=Potri.014G077300.1.p locus=Potri.014G077300 ID=Potri.014G077300.1.v4.1 annot-version=v4.1 ATGGGTGTGGGAGGCAAATTCTGGGATTTACTGAAACCCTACGCGCGACATGAAGGACCCGATTTCTTGAGAGAAAAGCGGGTCGCAGTGGATCTTTCTT ATTGGATTGTCCAACATGAAACAGCTATCAAGGCAACCCATGTTCGGAAACCTCATCTTCGTCTCACTTTCTTCCGTACTATCAATCTCTTCTCCAAGTT TGGAGCGCTTCCCGTATTTGTTGTTGATGGGACTCCGTCGCCATTGAAGTCTAAAGCAAGGATAGCGAGGTTTTTTCGGTTTTCGGGGGTTGATGTTTCG GGTTTGCCAGTGGCTGAAGGTGTTTCGGCGGAGAGGAACAAGACTTTTCTCAAATGCGTTCAAGAGTGTGTGGAACTGCTTGAACTGTTTGGGATGCCTG TTTTAAAGGCCAATGGTGAAGCTGAAGCACTGTGTGCTCAGTTAAATGCTGAAGGCCTTGTGGATGCGTGTATTACAGCTGATAGTGATGCTTTCCTTTT TGGGGCTAAGTGTGTGATAAAATGCGTCAAGCCTAATACCAAAGAACCATTTGAATGCTACCATATATCAGATGTTGAAGCTGGTCTTGGGTTGAAGAGG AAACACTTGATAGCCATTTCCCTCTTGGTTGGCAATGATCATGATCTTAATGGTGTGCAAGGGATTGGGCTTGAGAAGGCTCTTCGTTTTGTCCAAAGTT TCAGTGAAGATGAGATATTGAATCAGTTACATGAAATCAGCAATGGGAACTCTCCTTCACTTCAAATTGTTTCAAAAGTTGTAGATGAAATAATTCTTTG TCCAGATGAAAGCCCAGCAAGGTCGAAAACTTCTCATTGCTCCTTCTGTGGGCATCCAGGCAGCAAAAGAGCACATTTCAAGTCATCTTGTGAATATTGT GGGACTAGTACCAGTCAGGGTTGCACAAGAAAGGCAGAGGGTTTTAAGTGTAATTGCTCCTCCTGTAATAAGGATCGAAAAGAAAAGGAGCAGCAAAAGC ATGAAAATTGGCACATAAAAGTTTGCAACAAGATATCCACGGAGCCAAACTTTCCAAATGATGATATTATTCGAATGTATTTGTGCAACAAACATGGAAA CTTTACTGCTGGCGATGGCTTGTGTTTATCATGGAGATGCCCAGACACTGAAATACTAGTTGATTTCTTGGATTTTCATCAGCATTGGGAACCATCTTAT GTTCGACAGAGAATGCTTCCCATGTTGTCCACCATATATTTGAGAGAAATGGCTGCCAAGCCTGAGAAAACTATGTTGTATGGGCAGTATGTATTTGATT CTATTCAGCGTGTGAAAATAAGATATGGACACCAATCTTATGTGATCAGGTGGAGAAAAGTGACAAGTACAGCAGGCAGTATTGTCCGTACCAACTCTGT TGAAGAGTCTGACAAGCCTCAAGAAGAGATCGTTGAAATTGATGAATTCATTGATCATTTGGATGAGGATACTGCCCCCCAGATTCATATTGATGATGAG TGTTGCTTCCTGTTGACAGATGAAAATATGGAGCTTATTCGTGTTGCTTTTCCAGAAGAAGTTGAAAGATTTTGGCATGAGAAGGAACTGAAAGCATCGA AAAGAAGAAAGGTTTCAGGCTTTAAAAATGAAGGGTCCAGTGAAAAGTCAGAATCACCAAAGTCAAAACGTGTCCAACTTAGATTAACAGAATTTTACCG CTCTGCTAAGGTAGCAGCAATTCACGCAAAACAAGGAGATCTAGCCAATAATTCTGAAAATCAAGAGGATGGGCCATCAAAAGGGAAGACCAAGGTTTCA AGTTCAAACCTTCCAAAGTCTGTGAGACGCCGCCTTCTGTTTGAGTAG
AA sequence Show only first row Show all	>Potri.014G077300.1 pacid=42763799 polypeptide=Potri.014G077300.1.p locus=Potri.014G077300 ID=Potri.014G077300.1.v4.1 annot-version=v4.1 MGVGGKFWDLLKPYARHEGPDFLREKRVAVDLSYWIVQHETAIKATHVRKPHLRLTFFRTINLFSKFGALPVFVVDGTPSPLKSKARIARFFRFSGVDVS GLPVAEGVSAERNKTFLKCVQECVELLELFGMPVLKANGEAEALCAQLNAEGLVDACITADSDAFLFGAKCVIKCVKPNTKEPFECYHISDVEAGLGLKR KHLIAISLLVGNDHDLNGVQGIGLEKALRFVQSFSEDEILNQLHEISNGNSPSLQIVSKVVDEIILCPDESPARSKTSHCSFCGHPGSKRAHFKSSCEYC GTSTSQGCTRKAEGFKCNCSSCNKDRKEKEQQKHENWHIKVCNKISTEPNFPNDDIIRMYLCNKHGNFTAGDGLCLSWRCPDTEILVDFLDFHQHWEPSY VRQRMLPMLSTIYLREMAAKPEKTMLYGQYVFDSIQRVKIRYGHQSYVIRWRKVTSTAGSIVRTNSVEESDKPQEEIVEIDEFIDHLDEDTAPQIHIDDE CCFLLTDENMELIRVAFPEEVERFWHEKELKASKRRKVSGFKNEGSSEKSESPKSKRVQLRLTEFYRSAKVAAIHAKQGDLANNSENQEDGPSKGKTKVS SSNLPKSVRRRLLFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	0	1
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	1.41	0.8393	Pt-SERK2.3
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	5.09	0.8382
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Potri.004G211800 [exp]	5.74	0.7512
AT1G06590			unknown protein		Potri.004G081200 [exp]	8.60	0.7114
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	11.18	0.7238
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.018G131300 [exp]	12.36	0.7551
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	15.00	0.7802
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	15.09	0.7770
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	18.41	0.8018
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	21.49	0.7717

Compare expression of checked genes

Potri.014G077300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.