Plant FIBer expression Database

Potri.014G077400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00770 127 / 6e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G152700
[exp]
505 / 2e-177 AT4G00770 114 / 1e-27 unknown protein
Potri.001G110900
[exp]
94 / 3e-20 AT4G23020 135 / 9e-35 unknown protein
Potri.003G121100
[exp]
71 / 6e-13 AT4G23020 94 / 2e-20 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006336
[exp]
56 / 4e-08 AT4G23020 141 / 5e-37 unknown protein
Lus10015849
[exp]
52 / 6e-07 ND 41 / 0.001
Lus10029604
[exp]
49 / 6e-06 AT4G23020 114 / 4e-27 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G077400.2 pacid=42764519 polypeptide=Potri.014G077400.2.p locus=Potri.014G077400 ID=Potri.014G077400.2.v4.1 annot-version=v4.1
ATGGGTTCTTTCTATAATTCATGTTCAAGCACAAACTTTAAGCAAAGAAACCATGTTTCAATAGAGCACAGGCCTCAACTGCTTAAAGATTTTCTCATAG
ATGATGATTCAAATTTATGTTCCTCAAGTGGGTTCAGATCGTTTTCAAGAAAACCATGCGATTCCACTATGAAAACCCTTATCGAAATCGATCTTCGTAA
CCCAAAACGCATTGCTAATTCTAGCAATAATATTGCGAGTTACAAGCTACTTAGAAGTCGTTCGAAAGCAGCAGCCTCAACAACAATCTCAGCATTCCAA
GCCGTGATTAACGCCGTCAAGAACATCCATTTCACCGCCGTTAAGCCCCCCTCAATTTTACCGAGGAGTCTCTCTCGGAAACTGTCAAAAAAGAAGAGTC
AAAACAAGGAAAATGAAGTCAAAATAACAGTCACTATAAAAGACATTATACGGTGGAGATCATTTCGCGACATTGTCGAAGAGAAATCTCTGCCATCAGA
CTTGCCATCATCACCCTATCACTGCATCACTACCACAACCGGGTCCACTTCGACCACTCCACGTAGTGGGTCAAGCTGGTGTGATAGTGATTTTACCTCA
GATTATTTACCACCTTGGAACGGTAATTTTGATGAGTGTGGTGAAAAGGAGATAGAAGTGGGCAAAGAAAATTCACCATGCGTCGGCGAGGATTCTTTGG
AGTTAATAACAAATACAAAAGTGGGTCCCGAGGAGGATGAGGAGGAACGACTACATAGTCCTGTTTCAGTTACTGAATTCGAGTTTGAAGAAGATGAAGA
TTCAAGCTCATCTTTTGAGCAAAGCCTTGCCACTGTGGAGAGGACTAGAGAAAAGATTATGGAAAAGATCCGAAGGTTTGAGAGTCTAACCAAATTGGAC
TTTGTCAGCCTAGACAACTGGATGTCAATAGACGAAAACATCAGCTCTGGAGAAGATGATGACAACGAAGAAGACGACGATGATCCTGAAGGAATTAGAG
AGACAAACATGAACTTTGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTCATGAAGTCGAAGAAAGGGCATGGAAACTATTGAACCATGTAAAAGA
AACTGGCCTAGAATGTTGCAGTGACAACATGGACCTGCTATTCGACTTCTTTAGAGATGAATTGGCTACAAGAACGTATGAGAATAGTAAACAGAGCATT
GATGTGGAATTGCTTAAAAAAGCAAAAGCTTGGATAAATGGAGAAGACAGCTTGCGGGTTGAATGGGAATTAGAGCATAAAAGGGAGGTTTATGTCAGAG
ATATGGACAGGGAAGGCAGGTGGAGCAAGTTTGAGGAAGAGCAACAAGAGCTTGCTTTGGGAATTGAGAATGGGGTGCTTGATCTTTTGGTTGATGACCT
ATTGCTTGATCTCATCTCATACTAA
AA sequence
>Potri.014G077400.2 pacid=42764519 polypeptide=Potri.014G077400.2.p locus=Potri.014G077400 ID=Potri.014G077400.2.v4.1 annot-version=v4.1
MGSFYNSCSSTNFKQRNHVSIEHRPQLLKDFLIDDDSNLCSSSGFRSFSRKPCDSTMKTLIEIDLRNPKRIANSSNNIASYKLLRSRSKAAASTTISAFQ
AVINAVKNIHFTAVKPPSILPRSLSRKLSKKKSQNKENEVKITVTIKDIIRWRSFRDIVEEKSLPSDLPSSPYHCITTTTGSTSTTPRSGSSWCDSDFTS
DYLPPWNGNFDECGEKEIEVGKENSPCVGEDSLELITNTKVGPEEDEEERLHSPVSVTEFEFEEDEDSSSSFEQSLATVERTREKIMEKIRRFESLTKLD
FVSLDNWMSIDENISSGEDDDNEEDDDDPEGIRETNMNFEGEEEEEEEEEIHEVEERAWKLLNHVKETGLECCSDNMDLLFDFFRDELATRTYENSKQSI
DVELLKKAKAWINGEDSLRVEWELEHKREVYVRDMDREGRWSKFEEEQQELALGIENGVLDLLVDDLLLDLISY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G00770 unknown protein Potri.014G077400
[exp]
0 1
AT5G36930 Disease resistance protein (TI... Potri.019G001314
[exp]
2.23 0.8362
AT5G36930 Disease resistance protein (TI... Potri.019G003942
[exp]
4.00 0.8242
Potri.003G184501
[exp]
4.89 0.7893
AT3G17120 unknown protein Potri.010G148200
[exp]
9.16 0.6806
AT1G05010 ACO4, EAT1, EFE ethylene forming enzyme, ethyl... Potri.011G020900
[exp]
9.94 0.7365 ACO7,Pt-ACO1.3
AT1G29750 RKF1 receptor-like kinase in flower... Potri.004G063500
[exp]
12.96 0.7423 RKF1.1
AT2G42040 unknown protein Potri.016G059400
[exp]
13.41 0.6994
AT3G44480 COG1, RPP10, RP... recognition of peronospora par... Potri.019G095866
[exp]
13.85 0.7556
AT4G01550 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2... Potri.002G181800
[exp]
15.19 0.7471
AT4G23160 CRK8 cysteine-rich RLK (RECEPTOR-li... Potri.011G028901
[exp]
16.12 0.7147

Potri.014G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.