Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12600 566 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 543 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT2G02810 82 / 3e-17 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 77 / 1e-15 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111000 [exp] 576 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.003G121000 [exp] 572 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.016G139100 [exp] 70 / 3e-13 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 70 / 4e-13 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.008G209501 [exp] 45 / 2e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009315 [exp] 599 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 583 / 0 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 581 / 0 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 517 / 0 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 83 / 2e-17 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 77 / 2e-15 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 60 / 1e-09 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.014G077500.1 pacid=42763936 polypeptide=Potri.014G077500.1.p locus=Potri.014G077500 ID=Potri.014G077500.1.v4.1 annot-version=v4.1 ATGAAGAATGAAGAGCAAGAACGGTCTTTGTTTGGAATTTCTCTGACTGATAGACCAAGATGGAAACAATTCCTCATTTGCTCTTCTGGGTTTTTCTTTG GCTATCTTGTTAACGGCATATGTGAGGAATATGTGTACAACAGGCTTCAGTTCAGCTATGGCTGGTACTTTACATTTGTTCAAAGCTTTGTGTATGTTTT GCTGATTTATCTCCAAGGCTTTACTCCCAAGCAAATGGTGAATCCATGGAAGACTTATGTCAAGCTCTCGGCAGTTCTCATGGGTTCCCATGGACTCACC AAAGGGTCTCTGGCTTTTCTTAATTACCCTGCACAGATCATGTTTAAATCCACCAAGGTTCTTCCAGTGATGGTAATGGGTGCATTTATACCGGGTCTGA GACGCAAATACCCAGCTCATGAATATGCATCTGCGCTACTTTTAGTTGCGGGTCTGATCATTTTCACTTTAGCAGATGCAAAAACTTCACCTAATTTCAG CATCATTGGTGTTTTGATGATATCTGGTGCCCTGATCATGGATGCTTTTCTTGGTAACTTACAAGAAGCTATCTTTACCTTGAGTCCTGAAACAACACAG ATGGAGATGTTGTTTTGCTCAAGTGTGGTAGGTTTGCCGTTCTTGATCCCTCCCATGGTTTTGACAGGAGAACTATTCAAAGCATGGAACTCATGCTCGC AGCATCCATATGTGTACGTTGTATTAGTTTTTGAAGCCATGGCCACATTCATCGGCCAAGTCTCAGTCCTTTCACTCATTGCCCTTTTTGGTGCCGCAAC CACAGCAATGGTGACAACCGCGAGAAAGGCAGTAACATTGCTGCTATCATACTTGATATTCACAAAGCCATTAACTGAGCAACATGGGACTGGACTTTTG CTTATAGCCATGGGGATCACGTTGAAACTTTTGCCTGATAAAAATCCTTACAAGAGGAGCTCATCCTCGATTACTAAAAAGGCTAAGATCGAGAAACCTT CTACAAATGATGAAGAGAAGAGAGTATTTCAATTAGAAATTGAAGCTGCAGAGGATGAAGAGAAAAGGCCATTGGTGTAG
AA sequence Show only first row Show all	>Potri.014G077500.1 pacid=42763936 polypeptide=Potri.014G077500.1.p locus=Potri.014G077500 ID=Potri.014G077500.1.v4.1 annot-version=v4.1 MKNEEQERSLFGISLTDRPRWKQFLICSSGFFFGYLVNGICEEYVYNRLQFSYGWYFTFVQSFVYVLLIYLQGFTPKQMVNPWKTYVKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMVMGAFIPGLRRKYPAHEYASALLLVAGLIIFTLADAKTSPNFSIIGVLMISGALIMDAFLGNLQEAIFTLSPETTQ MEMLFCSSVVGLPFLIPPMVLTGELFKAWNSCSQHPYVYVVLVFEAMATFIGQVSVLSLIALFGAATTAMVTTARKAVTLLLSYLIFTKPLTEQHGTGLL LIAMGITLKLLPDKNPYKRSSSSITKKAKIEKPSTNDEEKRVFQLEIEAAEDEEKRPLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	0	1
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	1.41	0.9326
AT1G08590			Leucine-rich receptor-like pro...		Potri.013G048800 [exp]	1.41	0.9392
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	2.23	0.9206
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	7.34	0.8889
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.015G035800 [exp]	7.54	0.8953
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Potri.014G145700 [exp]	7.93	0.8937
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.001G082600 [exp]	10.00	0.8898
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Potri.014G126900 [exp]	15.68	0.9320	Pt-PCEL20.2
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G017500 [exp]	16.06	0.9163	Pt-PGI.1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.005G111400 [exp]	17.20	0.8825

Compare expression of checked genes

Potri.014G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.