Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01920 729 / 0 SET domain-containing protein (.1.2) AT1G14030 71 / 1e-12 Rubisco methyltransferase family protein (.1) AT2G18850 49 / 1e-05 SET domain-containing protein (.1.2) AT3G07670 47 / 2e-05 Rubisco methyltransferase family protein (.1) AT1G24610 47 / 2e-05 Rubisco methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090500 [exp] 68 / 6e-12 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G134200 [exp] 52 / 8e-07 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 47 / 2e-05 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016435 [exp] 743 / 0 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10019677 [exp] 271 / 3e-87 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2) Lus10040345 [exp] 55 / 1e-07 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10036780 [exp] 54 / 3e-07 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10006953 [exp] 50 / 5e-06 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 49 / 1e-05 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10012309 [exp] 47 / 4e-05 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 43 / 0.0005 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.014G077700.2 pacid=42764693 polypeptide=Potri.014G077700.2.p locus=Potri.014G077700 ID=Potri.014G077700.2.v4.1 annot-version=v4.1 ATGGCCAGTGAAGAAGAAGCAGCAGCAGCAGCAAAACTTGAAAGATTCCTTCAATGGCTCCAGGTTAACAAGGTTGAACTAAGAGGGTGCAACATCAAAT ACTGTGGTCAAAATAAAGGGTTTGGTGTCTTTTCATCTAATGATGTCTCTGATGGGGTTCTACTTGTTGTTCCACTAGATCTAGCAATAACTCCCATGAG AGTGTTACAAGATCCCCTTATTGGACCTGAGTGTAGATCTATGTTTGAAGAAGGAGAAGTTGATGACAGGTTTTTGATGATTCTATTTCTAATGTTAGAG CGCCTTCGAAATAATTCGTCTTGGAAACCGTACCTTGACATGCTTCCCAAAACCTTTGGAAATCCACTCTGGTTTACTGATGATGAGCTTTTGGAGTTGA AGGGGACAACACTATATCGGGCAACTGAATTACAGAGAAAAAGGTTGTTGTCTTTGTATGAAGACAAAGTGAAGGGCTTGGTGCAGAAACTTCTAATTCT AGATGGGGATTTAGAAAGTGAGGTGTGTTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGACACGTGCTTTGAACATTCCCCTTCCACGTTCTTAT GTGTTTCCACAAGTTCAAGAGGATCAGGACAGTCAGTCTTCACTTAACATTGATTCTGGGGTTTCCCATAGTGATATTTCTGCTGGAGACTTGACTGACA GGAAGGATGAAGAAAGATCCAAGGTTCCCGGAGTTGATGGCCAATTCGATGAGACTGTCTGGGTGGAGGGCCTTGTTCCTGGCATTGATTTTTGCAACCA TGATCTGAAGGCGGTGGCAACATGGGAGGTTGATGGAACAGGAATGACTACTGGAGTTCCTCACTCCATGTACCTTCTTTCTGCTGTAAAAACTCCCTTC CAAATGGAGAAAGAAATTACCATCAGCTATGGCAACAAGGGAAATGAGGAGTTACTGTACCTTTATGGATTTGTCATTGATAATAATCCGGATGAATATC TTATGGTCCATTATCCTGTAGAGGCAATTCAGAATGTTCCCTTTTCTGACTCCAAAATGCAGCTTCTTGAAGCACAGAAAGCTGAAATGCGGTGTCTTTT ACCTAAACGCTTGCTGGCTCATGGGTTTTTCCCAGCAGGCACAACAAGTAATGATGACAATGGTAAGGGAAAAGCAGATAAAATTTGCAGCTTCAGTTGG AGTGGTCAGCGCAGGATGCCGTCCTACGCAAATAAGCTGGTCTTTCCTGAGGAATTTTTAACTACGTTGAGGACCATAGCCATGCAGGAAGATGAGCTGT TAAAGGCTTCTTCATTTCTTGAAGAGCTTGTAGGGTCTGAAGGGGTGAGGCAACCAACAGATACAGAAGTTAGAACAGCAGTATGGGAGGCTTGTGGAGA TTCTGGAGCTCTACAATTGCTTTTTGATCTTCTTCAAACTAAGGTGATGAATCTTGAAGAAAATTTTGGAACTGAAGACTGTGATACCGAGCTGCTTGAA AAGGCCCAGGATGTGAAAAACATTGAACAGTGTGAAAGCAAGGATACGGATGAATCAGGTCATTACAAATTCATGAGCAGAAACAGGTGGTCAAGTATAG TATATAGAAAAGGGCAAAAGCAACTCGCCAGATTATTCCTGAAGGAAGCAGAGCACGTCTTGCACTTATCTTTGAGCGAAGGAGAGTGA
AA sequence Show only first row Show all	>Potri.014G077700.2 pacid=42764693 polypeptide=Potri.014G077700.2.p locus=Potri.014G077700 ID=Potri.014G077700.2.v4.1 annot-version=v4.1 MASEEEAAAAAKLERFLQWLQVNKVELRGCNIKYCGQNKGFGVFSSNDVSDGVLLVVPLDLAITPMRVLQDPLIGPECRSMFEEGEVDDRFLMILFLMLE RLRNNSSWKPYLDMLPKTFGNPLWFTDDELLELKGTTLYRATELQRKRLLSLYEDKVKGLVQKLLILDGDLESEVCFEDFLWANSVFWTRALNIPLPRSY VFPQVQEDQDSQSSLNIDSGVSHSDISAGDLTDRKDEERSKVPGVDGQFDETVWVEGLVPGIDFCNHDLKAVATWEVDGTGMTTGVPHSMYLLSAVKTPF QMEKEITISYGNKGNEELLYLYGFVIDNNPDEYLMVHYPVEAIQNVPFSDSKMQLLEAQKAEMRCLLPKRLLAHGFFPAGTTSNDDNGKGKADKICSFSW SGQRRMPSYANKLVFPEEFLTTLRTIAMQEDELLKASSFLEELVGSEGVRQPTDTEVRTAVWEACGDSGALQLLFDLLQTKVMNLEENFGTEDCDTELLE KAQDVKNIEQCESKDTDESGHYKFMSRNRWSSIVYRKGQKQLARLFLKEAEHVLHLSLSEGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01920			SET domain-containing protein ...		Potri.014G077700 [exp]	0	1
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.001G006400 [exp]	11.66	0.6290	Pt-SCL33.2
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Potri.005G098800 [exp]	12.00	0.6112
AT5G64010			unknown protein		Potri.005G064951 [exp]	15.49	0.6238
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G433800 [exp]	56.44	0.5242
AT4G31805			WRKY family transcription fact...		Potri.018G019400 [exp]	75.52	0.5218
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.012G103000 [exp]	76.97	0.5436
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258832 [exp]	82.65	0.5788
AT4G30630			unknown protein		Potri.006G183000 [exp]	94.29	0.5671
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.003G199301 [exp]	124.09	0.5530
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.014G103900 [exp]	135.45	0.5489	GIF2.2

Compare expression of checked genes

Potri.014G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.