Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 978 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 961 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 936 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT2G26660 45 / 0.0001 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G20150 44 / 0.0002 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120600 [exp] 1031 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G111400 [exp] 1021 / 0 AT4G22990 1087 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G061400 [exp] 48 / 1e-05 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.002G143900 [exp] 46 / 6e-05 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015852 [exp] 988 / 0 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10009314 [exp] 978 / 0 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 959 / 0 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10002956 [exp] 662 / 0 AT4G22990 797 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10043272 [exp] 49 / 6e-06 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 49 / 9e-06 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 46 / 0.0001 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G078000.1 pacid=42764262 polypeptide=Potri.014G078000.1.p locus=Potri.014G078000 ID=Potri.014G078000.1.v4.1 annot-version=v4.1 ATGGTTGCATTTGGGAAGAAGTTGAGACAGAACCAAATTGAAGAATGGCAACGATACTATATCAATTATAAGTTGTTGAAGAAGAAAGTCAACAGATATT CACAGCAAATTCAAGTTGGAGCAGACAATCAACAAAATGTTCTCAAGGACTTCTCAATAATGCTTGATAATCAGATTGAGAAGATTGTCATGTTTATGCT GGAACAAAAAGGACTGCTAGCAAGCAGATTGTCAATTCTTGGAGAACAGCATGACGCTCTTGTGGAGCAGTCAGATGGATCTAAAATATCTGAACTACGA GAAGCTTACAGGGCAGTAGGGCAGGATCTCTTAAGGCTTCTGTTTTTTGTTGAGATCAATGCTATTGGTTTGCGAAAGATTCTGAAGAAATTTGATAAGC GCTTTGGCTATAGGTTCACTGATTACTATGTGAAAACCCGAGCAAACCATCCTTATTCTCAGCTGCGGCAGGTCTTCAAGCATGTGGGTGTTGGGGCTGT TGTTGGAGCTATATCACGCAATCTTGCAGATCTTCAAGATCAAGAGGGAAACTACATATCGATATATGATCAGCCTGCATTATCCCACCCGGATCCTGTC ATTGATTCTATTAAAGCAGCGGTAAACAGGTTATCAAACTCAACAAATTTTCTAGAGTTTTTGGGAAAGCATGCGTTTATTTTTCAAGACGAGTCACCAA CTCCATCTGAAGACCATCTTGCTGAGCAGAGATATCATTTCATGTCACTTCTCTTGAACTTGGTGAATACATTTCTATATATGGTGAACACATATATCAT CGTCCCAACAGCAGATAACTACTCCCTACACCTTGGAGCAGCAGCAACTGTTTGTGGTGTCATTATTGGGTCGATGGCTGTTGCGCAGGTGTTCTCTTCA GTATATTTCAGTGCATGGTCAAATAGGTCATATCTGAGGCCACTTGTGTTTAGTAGCATCGTTCTTCTTGTGGGAAACACCTTATATGCACTGGCTTATG ACCTTAATTCCATACCGGTCCTTCTGATCGGTCGACTTTTCTGTGGGTTAGGTTCGGCAAGAGCTGTTAACAGACGTTACATCAGTGATTGTGTGCCGCT CAAATTGCGACTGAAAGCTTCAGCAGGCTTTGTCAGTGCAAGTGCACTAGGAATGGCATGCGGTCCAGCTCTTGCTTGCTTATTTCAAACCAATTTTAAG ATATACAAACTTACATTAAACCAAGACACATTACCTGGCTGGGTAATGGCTCTTTCATGGCTTGTCTATCTGCTCTGGCTGTGGGTTTCTTTTAGAGAGC CTCCTCGGGAGAATAACAAGCTTTTTCCACAGGAATCTTACACTGGGCTCCCAGTACAAGATGCTGTAAAAATTGATTTTACCCAACCATTGCTTTTGAA TTCAGAAGCTGAGCTTCAAGATAACAATGATGACCAAGAATTCGATGATGGTGAAGAAGATTCTGATGAGAACCATAAACCTGTCACTTCAATTGTGTCA GCATATCGATTACTTACACCATCTGTGAAGGTTCAATTATTTATTTATTTTATGCTGAAATATGCAATGGAGATTTTAGTTGCTGAATCAAGTGTCGTCA CCGGACATTACTTTATCTGGTCAACCACGAGTGTAGCATTTTTTCTTGCATTTCTGGGGCTAACAGTGCTTCCTGTGAATGTGATTGTTGGAAACTACAT CAGCAACATGTTTGAAGAGAGGCAAGTTCTGCTGGCATCTGAAATTATGGTGTTGATAGGTATACTCCTAAGCTTCCAAGTACTGATCCCTTATACAGTG CCTCAATATGTCAGCGCAGCACTTATCACATTCGTATCCGCTGAAGTCCTTGAAGGTGTGAATTTATCACTTCTATCTCGGGTCATGTCATCGAGGCTTT CTCGTGGGACATATAATGGAGGGTTGCTTTCAACAGAAGCTGGGACCTTGGCTCGAGTAATCGCAGATGGAACAATAACTTTGTCTGGGTACCTGGGAGA GAATAGGCTCTTGAATGTCACCTTGGTTCCTTCACTCTTCATCTGTCTATCCTCCATTATTGCCACCTGCTTCACCTACAACTCTCTCTACTGA
AA sequence Show only first row Show all	>Potri.014G078000.1 pacid=42764262 polypeptide=Potri.014G078000.1.p locus=Potri.014G078000 ID=Potri.014G078000.1.v4.1 annot-version=v4.1 MVAFGKKLRQNQIEEWQRYYINYKLLKKKVNRYSQQIQVGADNQQNVLKDFSIMLDNQIEKIVMFMLEQKGLLASRLSILGEQHDALVEQSDGSKISELR EAYRAVGQDLLRLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLRQVFKHVGVGAVVGAISRNLADLQDQEGNYISIYDQPALSHPDPV IDSIKAAVNRLSNSTNFLEFLGKHAFIFQDESPTPSEDHLAEQRYHFMSLLLNLVNTFLYMVNTYIIVPTADNYSLHLGAAATVCGVIIGSMAVAQVFSS VYFSAWSNRSYLRPLVFSSIVLLVGNTLYALAYDLNSIPVLLIGRLFCGLGSARAVNRRYISDCVPLKLRLKASAGFVSASALGMACGPALACLFQTNFK IYKLTLNQDTLPGWVMALSWLVYLLWLWVSFREPPRENNKLFPQESYTGLPVQDAVKIDFTQPLLLNSEAELQDNNDDQEFDDGEEDSDENHKPVTSIVS AYRLLTPSVKVQLFIYFMLKYAMEILVAESSVVTGHYFIWSTTSVAFFLAFLGLTVLPVNVIVGNYISNMFEERQVLLASEIMVLIGILLSFQVLIPYTV PQYVSAALITFVSAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGENRLLNVTLVPSLFICLSSIIATCFTYNSLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22990			Major Facilitator Superfamily ...		Potri.014G078000 [exp]	0	1
					Potri.010G239500 [exp]	5.47	0.8145
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	5.65	0.8232
AT5G45920			SGNH hydrolase-type esterase s...		Potri.011G063800 [exp]	5.83	0.8157
					Potri.001G258150 [exp]	6.92	0.7617
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.001G437700 [exp]	7.93	0.7977
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055401 [exp]	10.24	0.8066
					Potri.007G082350 [exp]	17.49	0.7728
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	18.70	0.8087	COMTL3,Pt-GSI.2
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	19.79	0.8088
					Potri.006G140801 [exp]	20.04	0.8075

Compare expression of checked genes

Potri.014G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.