Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SSE1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45690 450 / 6e-159 PEX16, SSE1, ATPEX16 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152300 [exp] 655 / 0 AT2G45690 450 / 5e-159 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036549 [exp] 465 / 4e-164 AT2G45690 388 / 8e-134 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1) Lus10041379 [exp] 462 / 9e-163 AT2G45690 386 / 9e-133 SHRUNKEN SEED 1, ARABIDOPSIS PEROXIN 16, shrunken seed protein (SSE1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08610 [poplar] [flax] Pex16 Peroxisomal membrane protein (Pex16)
Representative CDS sequence Show only first row Show all	>Potri.014G078300.1 pacid=42762541 polypeptide=Potri.014G078300.1.p locus=Potri.014G078300 ID=Potri.014G078300.1.v4.1 annot-version=v4.1 ATGGAGGCTTATAAGAAATGGGTCAGAAGGAATAAAGATTATGTTCACTCATTGGAGTCTCTTGCTAATGGATTGACATGGCTTCTTCCTGAACGGTTTT CCGCCTCAGAGATAGGACCAGAAGCAGTAACTGCAATCTTGGGCATTGTCACTGCTATAAATGAGCATATCATCGATACAACTCCAACCCAGATGTTTGC TGATCCCGTGAAGCCTAATTCCTTCCCATATTCGTTGTGCATATCTGCTATAAAAGATTTGGAAACATTGGTTGAAGTTGCAGCTCAACATTATTATGGT GATGATAAGAAATGGAATTTCATTGCTGTTACAGAAGCTACGAAGGTGCTAGTTAGGCTGGCTTTGTTCCGGAATAGTGGATATAAGATGCTTCTGCATG GAGGAGAGACACCAAATATTGAAAAGCATTTGGGTTTCTCAAGCTCGCAGCATAATGGTGGGGGTTTCCAAAAGCACGGAGCCCACCATGGCTCTAATGG ACAGAACCCATGGAATCTAGAAGGAAGGGCATTGTCTGCACTGAGCAGGTTTGGAGAAAATGCCAGGATGGGTTCTGATCCAGTGTGGTTGCGCGGGGTT CAACATAAGCAAGCTATCATGGAGCCTCCACCTCAAATGATTGAGAGGCCATCGCTTTCCATGATTTTATCTGAGAAAGGTGTTCAGGGGGCATTATTTC TCATGGGAGAGGTCCTGTTCATTACAAGACCCCTTATTTATGTGTTGCTCATCCGAAAGTATGGAATTCGGTCGTGGATTCCTTGGTTTCTTTCTCTGGC TGTAGACACTATAGGAGCAGGCTTTTTAACACAGGTTACTAAATCAAGGGATTATCATCTTACCGCTTCTGAACAGGATGAGTTGAAAAGAAGAAAATTG TTATGGGCGCTTTACCTTATGAGAGATCCATTCTTTAGCAAGTACACCAGGCAAAGACTTCAAAGCACTGAAAAACTACTAGAACCCGTTCCCATCATTG GGCTTCTAACAGCGAAAATTGTTGAGCTTGTTGTCGGTGCTCAGACTCGATACACCTACATGTCTGGATCATAA
AA sequence Show only first row Show all	>Potri.014G078300.1 pacid=42762541 polypeptide=Potri.014G078300.1.p locus=Potri.014G078300 ID=Potri.014G078300.1.v4.1 annot-version=v4.1 MEAYKKWVRRNKDYVHSLESLANGLTWLLPERFSASEIGPEAVTAILGIVTAINEHIIDTTPTQMFADPVKPNSFPYSLCISAIKDLETLVEVAAQHYYG DDKKWNFIAVTEATKVLVRLALFRNSGYKMLLHGGETPNIEKHLGFSSSQHNGGGFQKHGAHHGSNGQNPWNLEGRALSALSRFGENARMGSDPVWLRGV QHKQAIMEPPPQMIERPSLSMILSEKGVQGALFLMGEVLFITRPLIYVLLIRKYGIRSWIPWFLSLAVDTIGAGFLTQVTKSRDYHLTASEQDELKRRKL LWALYLMRDPFFSKYTRQRLQSTEKLLEPVPIIGLLTAKIVELVVGAQTRYTYMSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.014G078300 [exp]	0	1	Pt-SSE1.1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G160500 [exp]	6.92	0.5518
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	8.48	0.5633
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	19.07	0.4855
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	34.87	0.4670
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	47.19	0.5034
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Potri.012G046400 [exp]	53.66	0.4607
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	53.85	0.4966
					Potri.017G038601 [exp]	102.76	0.4188
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	104.49	0.4535
AT3G56840			FAD-dependent oxidoreductase f...		Potri.006G026100 [exp]	130.86	0.4275

Compare expression of checked genes

Potri.014G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.