Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61200 160 / 2e-50 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155500 [exp] 248 / 2e-85 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018847 [exp] 181 / 1e-58 AT3G61200 149 / 4e-46 Thioesterase superfamily protein (.1) Lus10000809 [exp] 161 / 9e-50 AT3G61200 135 / 3e-39 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF03061 [poplar] [flax] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G078900.2 pacid=42764047 polypeptide=Potri.014G078900.2.p locus=Potri.014G078900 ID=Potri.014G078900.2.v4.1 annot-version=v4.1 ATGACAGAAACTTCTTCTTCTTCAACGACCATCTCCAAAGACTTACCTTCAGAGCATGTCTTAGCAGTCACAAGGTTTTTTGAAAGCGTAGGAATCCATG CCTCTCTCCCTCAAAACTCCACTTCTAAAGACTTTTATTCCGATCTCTTTCGCGATCTCTTTAAAGCCGGCCATGTCCAACGTGGCCATGTCTCCTGTAT CGTCCCTGTCTTGCCCGTTGTTGGCAATTACTATAATGGGCTACATGGAGGCGCTGTTGGGGCTATAGCAGAGAGAGCGTCCATCGCTTGTGCTAGAACT GTTGTGGCTGATGATAAAAAACTTTTTCTTGGTGAATTAAGCATCTGTTACCTCTCTGCAGCAAAACTAAATGAGGTGTTGCTGGTTGAAGGGTCCGTAC TGAAGAGTGGAAGGAATTTGACTGTAGTTGCATCTGAATTCAGAATCAAGGAAACCAAGAAGTTGGTCTTTACTTCTCGTGCTACATTCTATCACATGCC TGCTGCCAAGTTATGA
AA sequence Show only first row Show all	>Potri.014G078900.2 pacid=42764047 polypeptide=Potri.014G078900.2.p locus=Potri.014G078900 ID=Potri.014G078900.2.v4.1 annot-version=v4.1 MTETSSSSTTISKDLPSEHVLAVTRFFESVGIHASLPQNSTSKDFYSDLFRDLFKAGHVQRGHVSCIVPVLPVVGNYYNGLHGGAVGAIAERASIACART VVADDKKLFLGELSICYLSAAKLNEVLLVEGSVLKSGRNLTVVASEFRIKETKKLVFTSRATFYHMPAAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	0	1
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G139800 [exp]	3.87	0.6934	MP2.3
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.018G066500 [exp]	6.48	0.6928
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	9.48	0.6679
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078000 [exp]	11.00	0.7771
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	12.36	0.6737
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	12.40	0.6905	ATGSTT1.3
AT5G14120			Major facilitator superfamily ...		Potri.012G098900 [exp]	17.14	0.6031
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	24.16	0.6847
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	31.11	0.6464
AT4G27130			Translation initiation factor ...		Potri.007G122600 [exp]	49.90	0.5993

Compare expression of checked genes

Potri.014G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.