Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73690 572 / 0 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 563 / 0 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 513 / 0 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 265 / 1e-86 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G67580 259 / 4e-79 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G76540 244 / 3e-78 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT2G38620 239 / 4e-76 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G20930 238 / 1e-75 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT5G64960 243 / 2e-75 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT5G10270 243 / 4e-75 CDKC;1 cyclin-dependent kinase C;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052100 [exp] 796 / 0 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.004G133500 [exp] 273 / 2e-89 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 246 / 6e-79 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.010G056900 [exp] 256 / 8e-78 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G142800 [exp] 242 / 2e-77 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 240 / 1e-76 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.008G178200 [exp] 251 / 3e-76 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G024600 [exp] 244 / 9e-76 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G092100 [exp] 246 / 1e-74 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040530 [exp] 682 / 0 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 655 / 0 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10038755 [exp] 243 / 4e-78 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10015816 [exp] 256 / 1e-77 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 254 / 5e-77 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021611 [exp] 239 / 6e-76 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 237 / 4e-75 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10036106 [exp] 242 / 6e-75 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 252 / 7e-75 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 239 / 8e-74 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G079100.2 pacid=42764626 polypeptide=Potri.014G079100.2.p locus=Potri.014G079100 ID=Potri.014G079100.2.v4.1 annot-version=v4.1 ATGTCAGAGAATGATGGGGAGAAGAAAGTAGCGGATAGATATCTAAAGCGAGAGATTCTTGGTGAAGGTACATATGGTGTTGTCTACAAAGCCATTGATA CTAAGACTGGGAAGACTGTTGCAATCAAGAAAATTCGGCTCGGAAGACAAAAGGAAGGAGTGAATTTTACAGCACTTAGAGAGATTAAACTTCTTAAAGA GCTTAAAGACCCGAATATAATCGAGTTGATCCATGCCTTCCCTCACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGATCTTGAAGCGGTG ATTCGCGATCCCAATATATTTCTTTCGCCAGGGGATATAAAATCATACTTTCAGATGACGTTGAAAGGACTAGCTGTTTGCCATAAGAAATGGGTTTTGC ATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAATGGGCAGCTCAAGCTTGCAGATTTTGGTTTAGCACGTATTTTTGGAAGTCCTGGTCGCAA GTTCACACACCAAGTCTTTGCTCGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCCAAACAATATGGTGCTAGTGTTGATGTATGGGCTGCAGGTTGT ATATTTGCAGAGCTACTGAATCGCAGACCATTCCTACAGGGGGATAGCGATATCGATCAACTAGGAAAGATCTTTCAGAAGTTGGGGACTCCAACTCCTT TGCAGTGGCCTGATTTGGAATGGCTTCCTGATTTTGTAGAATATTCATCTCAGATTATACAACCTTGGCGAAAACTGTGTCCAACGGCTAGTGACGATGC TTTAGATCTGTTATCTAAGATGTTTACATATGATCCAAGAGCTAGAATTTCAGTGCAACAGGCATTGGAACACAGGTATTTCACCTCCATACCTCTGCCC ACAGATCCAGCTAAGCTCCCTAGACCAGCTCCCAAGAGAGAATCACACAATCCTAGGACTTCAGATGTACATGATGGTCCTGTTGTCTTGTCACCAAAAA GGAAGGCAAGAAGAGTGATGTCAGATCGTGAAGGGTTTGCTGGAAATTCATTCCAAGTTGATAAGGTTGATGAATGTGGCGGTGAGATTAGACAGGCAGC TGGGGATAACACGGGCAGGAATGAACCGGTGCTGATGTCAGTAGATTTTTCTGTCTTTGGATCAAAACCAATGAGCAGACCTACGATTAACAGTGCTGAC AGATCTCATCTAAAGAGGAAACTGGATCTTGAGTTCCAGCATCCTGAATAA
AA sequence Show only first row Show all	>Potri.014G079100.2 pacid=42764626 polypeptide=Potri.014G079100.2.p locus=Potri.014G079100 ID=Potri.014G079100.2.v4.1 annot-version=v4.1 MSENDGEKKVADRYLKREILGEGTYGVVYKAIDTKTGKTVAIKKIRLGRQKEGVNFTALREIKLLKELKDPNIIELIHAFPHKGNLHLVFEFMETDLEAV IRDPNIFLSPGDIKSYFQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGAKQYGASVDVWAAGC IFAELLNRRPFLQGDSDIDQLGKIFQKLGTPTPLQWPDLEWLPDFVEYSSQIIQPWRKLCPTASDDALDLLSKMFTYDPRARISVQQALEHRYFTSIPLP TDPAKLPRPAPKRESHNPRTSDVHDGPVVLSPKRKARRVMSDREGFAGNSFQVDKVDECGGEIRQAAGDNTGRNEPVLMSVDFSVFGSKPMSRPTINSAD RSHLKRKLDLEFQHPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73690		CDKD1;1, AT;CDK...	cyclin-dependent kinase D1;1 (...		Potri.014G079100 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.003G212700 [exp]	5.65	0.8347	Pt-MOD1.2
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.001G106200 [exp]	13.41	0.7486	Pt-ADF.9
AT3G07010			Pectin lyase-like superfamily ...		Potri.002G238800 [exp]	16.49	0.7844
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	54.54	0.7424	ACO4
AT1G78520			Carbohydrate-binding X8 domain...		Potri.001G380600 [exp]	68.49	0.7310
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Potri.001G469300 [exp]	86.25	0.7352
AT2G40800			unknown protein		Potri.019G062200 [exp]	94.82	0.7384
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.003G124300 [exp]	99.58	0.7326
AT4G39690			unknown protein		Potri.007G087100 [exp]	104.62	0.7115
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.005G065300 [exp]	130.33	0.7062

Compare expression of checked genes

Potri.014G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.