Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DGD2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00550 718 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1) AT3G11670 548 / 0 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 563 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 559 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040927 [exp] 732 / 0 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10009820 [exp] 607 / 0 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10021273 [exp] 530 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004200 [exp] 529 / 2e-180 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 371 / 4e-123 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 336 / 3e-107 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029404 [exp] 159 / 3e-46 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 132 / 1e-36 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.014G079400.2 pacid=42763086 polypeptide=Potri.014G079400.2.p locus=Potri.014G079400 ID=Potri.014G079400.2.v4.1 annot-version=v4.1 ATGGATAACAAGAAGCAGCATATTGCAATTTTTACAACGGCCAGTCTTCCATGGATGACTGGAACTGCCGTAAACCCTCTGTTTCGTGCTGCGTTTCTTG CGAAAGATGGGAGTAGAAAGGTCACTTTGGTGATTCCGTGGTTGTCATTGCAGCATCAGAAATTAGTTTACCCCAATAATATCACCTTCACTTCACCTTC TGAGCAACAAGTGTATGTCCATCAATGGCTTCAGGAGAGGATTTCATTTTCACCTGCTTTTAGCATACAATTCTACCCCGCCAAGTTTGCTGTAGATAAA AGAAGCATTCTTTCCGTAGGAGATATCTCGGAAGTCATACCGGATGAAGATGCTGATGTTGCGGTCCTTGAGGAGCCTGAGCATCTCACGTGGTTTCATC ATGGGAAGAGATGGAAAACTAAATTCCGCCTTGTCATAGGAATTATACACACCAATTATCTGGAATATATCAAGAGAGAGAAGCATGGACGGGTTAAAGC AGTGGTTGTTAAATATATTAATAGTTGGGTTGTTGAAATCTACTGCCACAAGGTAATTAGATTGTCTGCCGCTACCCAGGATTATCCTAATTCCATAATC TGCAATGTTCATGGAGTGAATCCTAAGTTCCTTGAGATTGGCAAGAAAAAGATAGAGCTACAACAAAGTGGGAATGGGAATCAGGCCTTCACTAAAGGTG CCTACTACATTGGAAAAATGGTGTGGAGCAAAGGCTACAAGGAGCTTATTAAACTTCTTCAAGACAATCAAAAAGAGCTAATTGGGCTTGAGGTAGATTT ATATGGCAGTGGAGAAGACTCCGACCAAGTCCAGGCAGCTGCTAAAAAATTGGATCTGGTAGTCAGAGTATATCCTGGGCGTGATCATGCAGATCCTGTA TTCCACGATTATAAAGTGTTCCTGAATCCAAGCACCACAGACGTTGTTTGCACGACGACGGCAGAAGCATTGGCAATGGGCAAAATTGTTGTGTGTGCTA ATCACCCATCGAATGAATTCTTCAAGCAGTTTGTAAACTGCTGGACTTATGATAACAGCAAAGGATTTGTCGAGGCCACAAGCAGGGCTTTAACTGAAGA ACCTGCTGAGCTGACTGGTGCACAGAGACACGAGCTGTCATGGGAGGCTGCAACAGAACGGTTTCTGAGGGTTGCTGATCTGGACCAGGTATTTGCAAGG AAACCAGCAAAAAGTCTTTTAAAGAACTTTGCTTCCACATCTTTAAATACACGAATGGAGGATGTATCAGCATATCTGCACTATGTGGCTCTTGGTTCTG AAACATCAAGAAGAGCTTTCGGTGCAATTCCAGGGAGTCTGCAACCAGACGAAGAGCTATGTCAGGAGCTTGGGCTGGCTATTCCCGCAGCCACCCAAGG ATCAAAAGATCCTGTTGACACATTATGA
AA sequence Show only first row Show all	>Potri.014G079400.2 pacid=42763086 polypeptide=Potri.014G079400.2.p locus=Potri.014G079400 ID=Potri.014G079400.2.v4.1 annot-version=v4.1 MDNKKQHIAIFTTASLPWMTGTAVNPLFRAAFLAKDGSRKVTLVIPWLSLQHQKLVYPNNITFTSPSEQQVYVHQWLQERISFSPAFSIQFYPAKFAVDK RSILSVGDISEVIPDEDADVAVLEEPEHLTWFHHGKRWKTKFRLVIGIIHTNYLEYIKREKHGRVKAVVVKYINSWVVEIYCHKVIRLSAATQDYPNSII CNVHGVNPKFLEIGKKKIELQQSGNGNQAFTKGAYYIGKMVWSKGYKELIKLLQDNQKELIGLEVDLYGSGEDSDQVQAAAKKLDLVVRVYPGRDHADPV FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNEFFKQFVNCWTYDNSKGFVEATSRALTEEPAELTGAQRHELSWEAATERFLRVADLDQVFAR KPAKSLLKNFASTSLNTRMEDVSAYLHYVALGSETSRRAFGAIPGSLQPDEELCQELGLAIPAATQGSKDPVDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	0	1	Pt-DGD2.1
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	4.89	0.9195
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	4.89	0.9151
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	5.47	0.9077	CHC901
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	5.83	0.8906
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	6.00	0.9087
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.013G079800 [exp]	6.70	0.9012
AT5G27520		AtPNC2, PNC2	peroxisomal adenine nucleotide...		Potri.010G092100 [exp]	7.21	0.8716
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	9.38	0.8749
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	11.48	0.8983
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	12.36	0.9123	VFCYSPRO.1

Compare expression of checked genes

Potri.014G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.