Plant FIBer expression Database

Potri.014G079700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00560 436 / 8e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009821
[exp]
459 / 7e-164 AT4G00560 417 / 3e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Lus10040928
[exp]
291 / 7e-99 AT4G00560 271 / 4e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Lus10040929
[exp]
78 / 2e-18 AT4G00560 81 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01370 Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence
>Potri.014G079700.1 pacid=42762739 polypeptide=Potri.014G079700.1.p locus=Potri.014G079700 ID=Potri.014G079700.1.v4.1 annot-version=v4.1
ATGGAGACGAAGAGAGTGTTAGTGGTAGGAGGGACAGGCTACTTAGGCCAACACGTTTTACTATCCCTTTCACGAATCAAAGACAGCGCCCCTTACGATC
TCGCTTTCACTTACCACTCCAATTCAAATCTTCTTGAGCCCTTGCTTGACGCCATCCCTCACTCTCACGCTTTCCATGTTGATTTAACTACGGGTGACGG
ATTCCAATCCATCGCCTCCAAATTTGGCCAGCCTCATGTTGTGGTGAACTGTGCTGCACTGTCTGTGCCTCGTGTTTGTGAGAAGGACCCTGATGCTGCT
ATGTCTATAAATGTACCTTGCTCTCTTGTAAACTGGTTGTCGAGCTTCGAGGAGAGAGATACTCTACTTATCCATTTATCAACTGATCAAGTTTATGAAG
GGGTGAAATCATTCTACAAGGAAGAAGACGAAACTGTTCCTGTTAATGTGTATGGTAAATCAAAAGTGGCAGCAGAGCAGTTTATTTCTAAGACATGGCC
AAACTATGCAATATTGAGAAGCAGTATCATCTTTGGGCCACAAACTATCTCTCCCGTCCAAAAATCACTTCCAATTCAGTGGATTGATGGTGTCCTCTCC
AAAAAAGAACAAGTAGAGTTCTTCCATGATGAGTTCCGCTGCCCAGTGTATGTCAAGGATGTTGTGACCATTATACTGTCTTTGATAAACAAATGGATAA
TAGAGGGTAAGCAGATGAAGTTGCTCTTAAATGTTGGTGGACCTGACAGAGTATCTCGTGTTCAAATGGCTGAAACTGTTGCACATGTTAGAGGATACAA
CACCTCTTTGATCAAGCAAGTATCTGCATCTTCGGTTTATCGTGGAGTCTCATCGCCAGCTGACATATCCATGGATATTTCAAAACTGATTCAAACAGTA
AGTATATCGCCCACCTCATTCAGAGATGGTGTCATACTGACACTTGATTCAACTTAA
AA sequence
>Potri.014G079700.1 pacid=42762739 polypeptide=Potri.014G079700.1.p locus=Potri.014G079700 ID=Potri.014G079700.1.v4.1 annot-version=v4.1
METKRVLVVGGTGYLGQHVLLSLSRIKDSAPYDLAFTYHSNSNLLEPLLDAIPHSHAFHVDLTTGDGFQSIASKFGQPHVVVNCAALSVPRVCEKDPDAA
MSINVPCSLVNWLSSFEERDTLLIHLSTDQVYEGVKSFYKEEDETVPVNVYGKSKVAAEQFISKTWPNYAILRSSIIFGPQTISPVQKSLPIQWIDGVLS
KKEQVEFFHDEFRCPVYVKDVVTIILSLINKWIIEGKQMKLLLNVGGPDRVSRVQMAETVAHVRGYNTSLIKQVSASSVYRGVSSPADISMDISKLIQTV
SISPTSFRDGVILTLDST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G00560 NAD(P)-binding Rossmann-fold s... Potri.014G079700
[exp]
0 1
AT4G17486 PPPDE putative thiol peptidase... Potri.006G154400
[exp]
1.41 0.9493
AT2G45140 PVA12 plant VAP homolog 12 (.1) Potri.001G152000
[exp]
2.44 0.9440
AT2G35020 GlcNAc1pUT2 N-acetylglucosamine-1-phosphat... Potri.001G159700
[exp]
4.89 0.9399
AT5G59410 Rab5-interacting family protei... Potri.009G032100
[exp]
5.29 0.9393
AT3G09800 SNARE-like superfamily protein... Potri.001G197200
[exp]
5.65 0.9436
AT4G33945 ARM repeat superfamily protein... Potri.004G144100
[exp]
6.16 0.9461
AT3G55440 CYTOTPI, ATCTIM... CYTOSOLIC ISOFORM TRIOSE PHOSP... Potri.009G031200
[exp]
7.41 0.9402
AT2G14835 RING/U-box superfamily protein... Potri.001G294200
[exp]
7.93 0.9190
AT4G02580 NADH-ubiquinone oxidoreductase... Potri.005G218000
[exp]
12.40 0.9237
AT2G44610 RAB6, AtRABH1b,... Ras-related small GTP-binding ... Potri.001G147900
[exp]
12.96 0.9349

Potri.014G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.