Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37360 956 / 0 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G53510 947 / 0 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT2G39350 920 / 0 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT5G13580 916 / 0 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55090 909 / 0 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 838 / 0 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55100 801 / 0 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55130 796 / 0 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT2G13610 332 / 1e-103 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 317 / 1e-98 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156900 [exp] 1249 / 0 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 1133 / 0 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 985 / 0 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 981 / 0 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 334 / 4e-105 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 331 / 6e-104 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 330 / 1e-103 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 329 / 1e-102 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 328 / 2e-102 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025281 [exp] 1033 / 0 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 1002 / 0 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 511 / 3e-177 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 401 / 6e-130 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10001972 [exp] 376 / 3e-126 AT5G13580 430 / 7e-148 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10030307 [exp] 314 / 5e-101 AT2G37360 366 / 9e-122 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 303 / 7e-93 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 301 / 7e-92 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 295 / 9e-90 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 295 / 5e-89 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.014G080200.1 pacid=42762431 polypeptide=Potri.014G080200.1.p locus=Potri.014G080200 ID=Potri.014G080200.1.v4.1 annot-version=v4.1 ATGTCCGGTTTAGGACATCCAAACATGTCACAAGGAGAAGGTTTTTTTCCCAGTGACAACCTGCCACTCTTTAACCATAACAACCGAATGGAGCTCCAAC AATATCCTAGAAGATCCAAACCTTCTCTTTCTCCTACTCTTGGTGAGCTCCTAAAGCGTGTAGAAGATGCGCAAAGCGACACCTCCATTGACAGCACTCC TGTCCATCATCATCAAGCCCTTGAGCTAGGCTATGCCTGTAGCTCTATGCCACCATCGAGCCCCTTTGTTCTTTCTTTTAACAACTTAACATACAGTGTC AAAGTTGGCCAAAATATGCCGTTTCCAGTCTGTGGAAAGGAGGACTTGTCACATGGTTCTTCAGAGACAGCTAGCATGAAGGTTTTGTTGAATGATATAT CAGGAGAAGCGAGAGAGGGGGAAATTATGGCTGTTCTTGGGGCTAGCGGGTCCGGAAAATCCACATTGATTGATGCACTTGCTGACCGAATTGCAAAGGA GAGCTTGAAAGGGTCTGTGACTTTGAATGGTGAGGTCTTGGAGTCAAGGCTATTGAAAGTGATATCTGCTTATGTGATGCAAGATGATCTTTTGTTTCCT ATGCTTACTGTGGAAGAGACACTGATGTTCTCGGCCGATTTCAGGCTTCCCCGCTCCCTCTCCAGGTCAAAAAAGAAAGCAAGAGTTCAGGCCTTGATCG ATCAGTTAGGCTTGCGTAATGCAGCCAATACTGTGATTGGAGATGAAGGACATAGAGGCGTGTCAGGAGGTGAAAGAAGAAGAGTTTCTATTGGAACTGA CATTGTTCATGACCCGATTCTCTTGTTTCTTGACGAGCCAACTTCAGGGCTTGATTCAACTAGTGCTTTTATGGTTGTTAAGGTTTTGCAGCGCATCGCA CGAAGCGGAAGCATTGTGATCATGTCCGTGCACCAACCAAGTTACAGAATCTTGACCGTACTTGACAGTTTGATCTTTCTTTCACATGGGCAAACAGTAT ATGGTGGCTCTCCAGGAGGTCTTCCAGAATTCTTTGGTCAGTTTGGACATCCAATTCCTGAGAACGAGAACCGAACTGAGTTTGCGCTGGATTTGATTCG TGAACTTGAAGAAGCTCCTGATGGAACCAAGACCCTAGTTGAATTCAACAAGTCATGGCAAACCAAGAAAAATCCCACGAACAGAACCTGCAATGTATCC AAGCTTTCACTCAAGGACGCAATAAGTGCCAGCATTTCGAGAGGGAAACTGGTCTCCGGTGCCCCAAATAATTCAAACTCGACATCTTCAGTTCCAACCT TTGCCAATCCACTCTGGGCTGAAATGATGGTTATAAGCAAAAGATCATTACTCAATGCAAAAAGAATGCCTGAATTGTTTGGAATTCGCCTTGGTGCTGT TCTTGTTACAGGTATAATCTTGGCTACCGTTTTTTATCATCTTGACAACTCTCCCAGAGGTGCGCAAGAGCGATTGGGCTTCTTTGCTTTCGCCATGTCC ACTACTTACTACACCTGTGCAGAATCTATCCCTGCCTTTCTCCAAGAACGTTATATTTTCATGAGAGAAACCGCCTACAATGCTTATCGCCGCTCTTCAT ACGTTCTTGCTCACTCTCTAATCTCAATTCCCTCTCTGATCGTACTTTCTATTGCCTTTGCTGCAACAACATTCTGGGCTGTAGGACTTGATGGTGGGTT TTCTGGGTTCTGCTTCTACTTCTTCGCAATCTTGTCTGCATTTTGGGCTGGAAGTTCGTTTGTTACTTTTCTTTCAGGTGTTGTCTCTCATGTTATGCTG GGTTTCACCATTGTGGTTGCCATCTTGGCATACTTTCTTCTCTTCAGTGGATTCTTCATCTCTCGAGACCGAGTCCCATCGTACTGGATATGGTTTCACT ATATATCTCTGGTGAAATATCCATACGAGGCAGCTCTGCAAAATGAATTTCATGATCCAACAAAATGTTTTGTTAGGGGTGTGCAAATGTTTGATACCAC ACCTCTTGCTGCGGTGCCATTGTCGTTGAAATTGAAGATGTTGAAGAGCATTAGCAGCACTTTGGGCATGAACATTACAGGCAACACTTGTGTAGTCACA GGAACAGATATTCTAAGGCAACAAGGGATAACACAAATAAGCAAATGGAATTGCTTGTGGGTCACTATTGCTTGGGGGTTTTTCTTCAGGATTCTTTTTT ATTTTGCTTTGTTGTTGGGCAGCAAGAACAAGAGGAGGTGA
AA sequence Show only first row Show all	>Potri.014G080200.1 pacid=42762431 polypeptide=Potri.014G080200.1.p locus=Potri.014G080200 ID=Potri.014G080200.1.v4.1 annot-version=v4.1 MSGLGHPNMSQGEGFFPSDNLPLFNHNNRMELQQYPRRSKPSLSPTLGELLKRVEDAQSDTSIDSTPVHHHQALELGYACSSMPPSSPFVLSFNNLTYSV KVGQNMPFPVCGKEDLSHGSSETASMKVLLNDISGEAREGEIMAVLGASGSGKSTLIDALADRIAKESLKGSVTLNGEVLESRLLKVISAYVMQDDLLFP MLTVEETLMFSADFRLPRSLSRSKKKARVQALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIVHDPILLFLDEPTSGLDSTSAFMVVKVLQRIA RSGSIVIMSVHQPSYRILTVLDSLIFLSHGQTVYGGSPGGLPEFFGQFGHPIPENENRTEFALDLIRELEEAPDGTKTLVEFNKSWQTKKNPTNRTCNVS KLSLKDAISASISRGKLVSGAPNNSNSTSSVPTFANPLWAEMMVISKRSLLNAKRMPELFGIRLGAVLVTGIILATVFYHLDNSPRGAQERLGFFAFAMS TTYYTCAESIPAFLQERYIFMRETAYNAYRRSSYVLAHSLISIPSLIVLSIAFAATTFWAVGLDGGFSGFCFYFFAILSAFWAGSSFVTFLSGVVSHVML GFTIVVAILAYFLLFSGFFISRDRVPSYWIWFHYISLVKYPYEAALQNEFHDPTKCFVRGVQMFDTTPLAAVPLSLKLKMLKSISSTLGMNITGNTCVVT GTDILRQQGITQISKWNCLWVTIAWGFFFRILFYFALLLGSKNKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	0	1
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	1.73	0.9834
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	2.00	0.9870
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	2.82	0.9862
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	4.00	0.9819
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232500 [exp]	4.24	0.9710
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	4.24	0.9761
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	5.00	0.9799
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	6.63	0.9678
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	7.74	0.9695
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	8.36	0.9737

Compare expression of checked genes

Potri.014G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.