Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45790 430 / 8e-155 ATPMM phosphomannomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080500 [exp] 490 / 2e-178 AT2G45790 445 / 8e-161 phosphomannomutase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009825 [exp] 440 / 1e-158 AT2G45790 431 / 2e-155 phosphomannomutase (.1) Lus10040934 [exp] 439 / 3e-158 AT2G45790 432 / 9e-156 phosphomannomutase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03332 [poplar] [flax] PMM Eukaryotic phosphomannomutase
Representative CDS sequence Show only first row Show all	>Potri.014G080300.1 pacid=42763848 polypeptide=Potri.014G080300.1.p locus=Potri.014G080300 ID=Potri.014G080300.1.v4.1 annot-version=v4.1 ATGGCCGTGAGAAAACCTGGTTTAATTGCTCTATTTGATCTTGATGACACTCTCACTGCTCCAAGGAAGGCAGCCACCCCAAGTATGTTAGAGTTCATCA AGGAACTCCGAAAGGTTGTTACTATAGGACTGGTGGGTGGATCTGATCTCTCTAAGATATCAGAGCAGCTTGGAAAGACAGTTATTAACGACTATGATTA TGTATTTTCTGAAAATGGGCTTGTTGCTCACAAAGATGGGAAGCTTATCGGCACCCAGAGCTTGAAGTCATTTCTTGGAGATGAGAAGCTCAAGGAATTT ATAAACTTCACACTTCATTATATTGCTGACTTGGATATCCCCATAAAAAGGGGAACATTTATAGAATTACGAAGTGGGATGCTTAATGTGTCACCAATTG GACGGAACTGCAGCCAAGAAGAAAGAGATGAATTTGAAAAGTATGACAAGGTTCATAACATACGCCCAAAAATGTTATCTGTGCTGTGTGAAAAGTTCGC TCACCTTAACCTCACATTTTCAATAGGGGGACAGATAAGCTTTGATGTTTTCCCTCAAGGCTGGGACAAGACATACTGTTTGAGATACCTTGACGAGTTC AGTGAAATTCACTTCTTTGGTGACAAAACCTACAAGGGGGGAAACGATCATGAGATATATGAATCAGAACGAACGGTGGGTCATACAGTTACCAGCCCTG ATGATACAGTGGAGCAGTGTAAAGCCCTCTTCTTTGCCTGA
AA sequence Show only first row Show all	>Potri.014G080300.1 pacid=42763848 polypeptide=Potri.014G080300.1.p locus=Potri.014G080300 ID=Potri.014G080300.1.v4.1 annot-version=v4.1 MAVRKPGLIALFDLDDTLTAPRKAATPSMLEFIKELRKVVTIGLVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHKDGKLIGTQSLKSFLGDEKLKEF INFTLHYIADLDIPIKRGTFIELRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKMLSVLCEKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDEF SEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPDDTVEQCKALFFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45790		ATPMM	phosphomannomutase (.1)		Potri.014G080300 [exp]	0	1
AT2G45790		ATPMM	phosphomannomutase (.1)		Potri.014G080500 [exp]	1.73	0.8329
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	1.73	0.8696
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.016G138800 [exp]	7.74	0.7884
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	7.87	0.8397
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.019G056500 [exp]	11.22	0.7481
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Potri.002G136500 [exp]	12.84	0.7911	CRK.2
AT3G56250			unknown protein		Potri.013G083700 [exp]	15.62	0.8012
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.002G145200 [exp]	18.00	0.7799
AT4G09060			unknown protein		Potri.002G101400 [exp]	18.33	0.7590
AT2G04340			unknown protein		Potri.001G240904 [exp]	30.00	0.7698

Compare expression of checked genes

Potri.014G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.