Plant FIBer expression Database

Potri.014G080500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45790 445 / 6e-161 ATPMM phosphomannomutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G080300
[exp]
490 / 2e-178 AT2G45790 429 / 1e-154 phosphomannomutase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009825
[exp]
447 / 1e-161 AT2G45790 431 / 2e-155 phosphomannomutase (.1)
Lus10040934
[exp]
446 / 4e-161 AT2G45790 432 / 9e-156 phosphomannomutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF03332 PMM Eukaryotic phosphomannomutase
Representative CDS sequence
>Potri.014G080500.4 pacid=42763854 polypeptide=Potri.014G080500.4.p locus=Potri.014G080500 ID=Potri.014G080500.4.v4.1 annot-version=v4.1
ATGGCCGTGAGAAAACCTGGTTTAATTGCTCTATTTGATGTTGATGGCACTCTCACTGCTCCAAGGAAGGAAGCCACCCCTAGTATGATAGAGTTCGTCA
AGGAACTCCGAAAGGTTGTTACTATAGGAGTGGTGGGTGGATCTGATCTCTCTAAGATATCAGAACAGCTTGGAAAGACAGTTATTAACGACTATGATTA
TGTATTTTCTGAAAATGGGCTTGTTGCTCACAAAGATGGGAAGCTTATCGGCACCCAGAGCTTGAAGTCATTTCTTGGAGACGAGAAGCTCAAGGAATTT
ATAAACTTCACACTTCATTATATTGCTGACTTGGATATCCCCATAAAAAGGGGAACATTTATAGAATTCCGAAGTGGGATGCTTAATGTATCACCAATTG
GACGGAACTGCAGCCAAGAAGAAAGAGATGAATTTGAAAAGTATGACAAGGTTCAAAACATTCGCCCAAAAATGGTATCTGTGCTGCGTGAAAAGTTCGC
TCACCTTAACCTCACATTTTCAATAGGGGGACAGATAAGCTTTGATGTTTTCCCTCAAGGCTGGGACAAGACATACTGTTTGAGATACCTTGACGAGTTC
AGTGAAATTCACTTCTTTGGTGACAAAACCTACAAGGGGGGAAACGATCATGAGATATATGAATCAGAACGAACTGTGGGTCATACAGTTACCAGCCCTG
ATGATACAGTGGAGCAGTGTAAAGCCCTCTTCTTTGCCTGA
AA sequence
>Potri.014G080500.4 pacid=42763854 polypeptide=Potri.014G080500.4.p locus=Potri.014G080500 ID=Potri.014G080500.4.v4.1 annot-version=v4.1
MAVRKPGLIALFDVDGTLTAPRKEATPSMIEFVKELRKVVTIGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHKDGKLIGTQSLKSFLGDEKLKEF
INFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDEF
SEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPDDTVEQCKALFFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45790 ATPMM phosphomannomutase (.1) Potri.014G080500
[exp]
0 1
AT2G45790 ATPMM phosphomannomutase (.1) Potri.014G080300
[exp]
1.73 0.8329
AT2G07180 Protein kinase superfamily pro... Potri.006G079600
[exp]
20.49 0.7166
AT1G04650 unknown protein Potri.001G053000
[exp]
35.21 0.7200
AT5G11730 Core-2/I-branching beta-1,6-N-... Potri.018G059100
[exp]
35.46 0.7055
AT1G32100 ATPRR1 pinoresinol reductase 1 (.1) Potri.003G100200
[exp]
41.89 0.7175 PCBERp8
AT3G53010 Domain of unknown function (DU... Potri.014G022600
[exp]
44.49 0.7133
AT3G07130 ATPAP15, PAP15 purple acid phosphatase 15 (.1... Potri.017G055800
[exp]
47.98 0.6658
AT5G05170 IXR1, CEV1, ATH... ISOXABEN RESISTANT 1, CONSTIT... Potri.006G052600
[exp]
55.09 0.6901 CESA4.1
AT5G06270 unknown protein Potri.009G161400
[exp]
68.37 0.6634
AT1G51630 O-fucosyltransferase family pr... Potri.008G008300
[exp]
69.55 0.6518

Potri.014G080500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.