Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00590 488 / 3e-172 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 64 / 5e-11 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G08100 62 / 1e-10 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063400 [exp] 67 / 6e-12 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G022900 [exp] 65 / 2e-11 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 65 / 2e-11 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040935 [exp] 484 / 8e-171 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 444 / 4e-155 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034655 [exp] 72 / 1e-13 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 67 / 6e-12 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10034668 [exp] 61 / 6e-10 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF01112 [poplar] [flax] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Potri.014G080600.1 pacid=42763675 polypeptide=Potri.014G080600.1.p locus=Potri.014G080600 ID=Potri.014G080600.1.v4.1 annot-version=v4.1 ATGGCCTGTGAATCAGAGGATCAGAACCCTAGATTCTTCGTGGCGGTTCATGTTGGAGCGGGATATCACGCGCCATCCAATGAAAAAGTTCTGAGGTCCG CCATGAAGCGCGCTTGTCTCGCTGCTGCTTCTATTCTTCGCAAGGGTCCTGGTGGATGTATAGATGCTGTTACGGCCGCCATTCAAATGTTGGAGGATGA CCCAAGCACAAATGCAGGCCAGGGTTCTAATTTGACGGAAGATGGTCATGTGGAATGTGATGCTAGTATTATGGATGGTGATTCTGGTGCATTTGGAGCT GTTGGAGCTGTTCCAGGTGTCCGAAATGCCATCCATATTGCTGCATTATTGGCCAAGGAGCAAATGATGGGGTCTTCACTGTTGGGTCGAATACCTCCTA TGTTCTTGGTTGGTGAAGGTGCACGTGTATGGGGGAAGTCCAAAGGCATTGATTTGCCAGAAATTGTGGAGGCAGAAAAGTGGCTAGTGACAGCAAGGGC AAAAGAACAATGGACAAAGTACAAAAGAATGCTTGCTAATGCCAATGCTAAGATTTATTCTGATGATAGACTTTGTTGTAGTGCTCAAGAGACCTCAAAA ATCTCAGAATTAGAATTTCAATCTCATGAACCTTCAGAAGGGAATGATGGTGGGCAATCGTCTATGCCAAGCACCATGGAAGAGGACTGTATCATGGACA CAGTTGGAGTTATCTGTGTTGACACTGAAGGACACATAGCTTCTGGGGCCTCTAGTGGTGGTATAGCAATGAAGATAGGTGGGCGAGTGGGGCTGGCAGC AATGCATGGTTGTGGTTGCTGGGCTTCTTCAAGGGGTCCTTTTGGAGTTCCATTCATAGTTGGCTGCTGTGCTTCTGGTGCTGGTGAATACCTAATGAAA GGATTCGCTGCTAGGGAGTGCTGTGTTTCGGCATCAATTTCCCAGGCTGGTCCTGCCTCTGCTAGTATGAAAGTATTACGGTCTGTAATTCTGGATGACA ATCGAAATACTACTGAAAAAAGTGCTGGGATTTTACTTGTGCAAGCCGATGCCCCTATGATGGCTCCAGGAAACTCACCGAGTCTGAAAGCAATAGAAAT TGCAGCAGCTTTTTCCTCGTTGTCTTTTGGGATAGGATATCATGGAAGTTCTATGAAACGGCCCAAGGTTTCTGTTCTTCGCAGTACGAAACAGCAAAGA AAAACTGGAATAGACCATTTTGAAGCACGAGTTGATCTTTCGGCCAAAAATTTATTGTGA
AA sequence Show only first row Show all	>Potri.014G080600.1 pacid=42763675 polypeptide=Potri.014G080600.1.p locus=Potri.014G080600 ID=Potri.014G080600.1.v4.1 annot-version=v4.1 MACESEDQNPRFFVAVHVGAGYHAPSNEKVLRSAMKRACLAAASILRKGPGGCIDAVTAAIQMLEDDPSTNAGQGSNLTEDGHVECDASIMDGDSGAFGA VGAVPGVRNAIHIAALLAKEQMMGSSLLGRIPPMFLVGEGARVWGKSKGIDLPEIVEAEKWLVTARAKEQWTKYKRMLANANAKIYSDDRLCCSAQETSK ISELEFQSHEPSEGNDGGQSSMPSTMEEDCIMDTVGVICVDTEGHIASGASSGGIAMKIGGRVGLAAMHGCGCWASSRGPFGVPFIVGCCASGAGEYLMK GFAARECCVSASISQAGPASASMKVLRSVILDDNRNTTEKSAGILLVQADAPMMAPGNSPSLKAIEIAAAFSSLSFGIGYHGSSMKRPKVSVLRSTKQQR KTGIDHFEARVDLSAKNLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00590			N-terminal nucleophile aminohy...		Potri.014G080600 [exp]	0	1
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	2.00	0.8912
					Potri.003G214400 [exp]	2.44	0.8788
					Potri.004G011801 [exp]	4.58	0.8704
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	4.89	0.8682
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G271200 [exp]	6.92	0.8545
					Potri.001G422000 [exp]	7.41	0.8548
					Potri.001G172000 [exp]	8.71	0.7828
AT1G15780			unknown protein		Potri.016G028200 [exp]	9.38	0.7968
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019200 [exp]	10.09	0.8303
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.001G302300 [exp]	11.44	0.9023

Compare expression of checked genes

Potri.014G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.