Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01790 1299 / 0 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 1278 / 0 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT4G04850 280 / 3e-80 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT5G51710 118 / 3e-27 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 99 / 9e-21 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 79 / 1e-14 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT4G01240 45 / 0.0003 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157200 [exp] 1868 / 0 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 259 / 2e-72 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.015G132400 [exp] 124 / 6e-29 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 122 / 2e-28 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 72 / 1e-12 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 72 / 1e-12 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018844 [exp] 1294 / 0 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 677 / 0 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10009830 [exp] 655 / 0 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 624 / 0 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 369 / 6e-119 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 256 / 7e-73 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 204 / 4e-56 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020484 [exp] 75 / 2e-14 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10031106 [exp] 77 / 4e-14 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 77 / 6e-14 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family CL0063 [poplar] [flax] NADP_Rossmann PF02254 [poplar] [flax] TrkA_N TrkA-N domain
Representative CDS sequence Show only first row Show all	>Potri.014G080800.2 pacid=42762961 polypeptide=Potri.014G080800.2.p locus=Potri.014G080800 ID=Potri.014G080800.2.v4.1 annot-version=v4.1 ATGGAGTTCGCGTGTAATTTTCAGCAAACAAATGCATTTTACAGAACACAAGGTACTGATTATAAGGTGTCCAATGGGTTACATTCGAGATTTAGATATA GAAGTTATGGGTATAATGATGTTGATTTGAAGATTGTTTCGAGAGAAAGACCTTCAAAGAAATTAAAGAAGAGTGTTCTTGCATATGGTGGTGGTCGTGG AATTCATAGTCATTTGCGTGTTGGTGGGTATTCAAGTGAACCGTTGTTTTGCAATTTTATTGATGGATTTAAGGGATTGAGAAGTGTTAAGTTGGGGTGT CAAGGTAATGATTCGTTAGCATATATTGATGGGAATGGTAGAAATGTAGAAAATGGAGAGGGTAATGATGAGAGCTTGAGAGCAGGGTCTAATAGTGGCT TTGGAGAGGGGGATGGAAGAGGAGAAAAAGAAGTGGAGACTGGGGTGGTGGTGGAGGCGCTGAATTTGGATGAGTTGAAGGAATTGTTACACAAAGCGAC GAGGGATTTGGAAGTTGCACAGCTTAATAGTACGATGTTTGAGGAAAAGGCGCAAAGTATATCAGAAACTGCAATAGCTTTGCAAGATGAGGCTGAAAGT GCTTGGAATGATGTTAACTCAACACTTGATTTGATTCAGGATATTGTGAACGAGGAGGGTGTTGCTAAAGAAGCTGCTCAAAAAGCAACAATGGCTCTTT CTTTGGCTGAGGCAAGGCTTAAGGTGGCAGTGGAGTCAATAAAAGCTATGAAAGAAAGGGTTGATTCATTGGAGGGTTCTAGAGAGAGTGATGCGGAAAA TGATGGTAAAGAAGATTATGAGACAATTTTGGCTGCTCAGAATGATATCAGGGATTGCCAGGCAAATTTGGCAAATTGTGAAGCAGAGTTGAGGCGCTTG CAAAGTAAAAAGGAAGCATTGCAAAATGAAGTAAGCGTGTTGAATGAGAAAGCTGAGAAAGCACAAATGAATGCTTTGAAAGCAGAGGAGGATGTTGCAA ACATTATGCTTCTAGCTGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACTCAACGAGTGAATGATGCAGAGATTGCATTAAAAAAAGCAGAGAAATCTCT CGCTAGTTCTCGTGTTGATATTCAGGAAACAGCCCGGGGGTATGTATCTGGTGATGAGGCTGTAATCGAGGAGCAGAAGATGGGTGGAGGAAGTGCTTCT GATGTTGAGAAAGAAAGAGATATGACTGTGAATGGTGATGTTTTAGTTGGCGAGCCTTCAATAGATAGACTATCTGATAAAACTAGCCAGAGTTCTGAAG AGCTATATCTATCCGATGATTCTAGTGACCATGAGAATGGAAAATTGAGCTTGGACTCTAATAAAGATACTGAAGCAGAAGCTGAAAAGTCAAAAAGCGG CGATCAAACAAAAAAGCAGGAAATACAGAAGGACTTGACCTGGGAGAGTTCATCTTCACCTCTCAGCGCTCCCAAGGCGTTGTTGATGAAATCTTCTCGT TTCTTTTCTGCATCCTTCTTCTCTTTCAGTGGAGATGAGACAGAGGTGACAGCAGCATCGGTTTTTCAGGGCCTCATGGAGTCTGCAAGAAAGCAATTGC CCCAACTTGTTCTTGGCCTATTGCTGTTTGGAACAGGATTTGCCTTCTACTCTAATCGAGTGGAGAGGAGTCCTCAGATGCTTCAACAATCAGATATTGT CACGACTAGCATTGAAGAAGTTTCATCAAATGCAAAGCCTCTGATTCAACATATTCAGAAACTCCCGAAGAGATTCAAAAAACTAATTGCAATGCTTCCT CATCAAGAGATGAATGAAGAGGAAGCATCTCTCTTTGATGTTTTGTGGTTGCTGCTTGCTAGTGTTATTTTTGTGCCTATATTTCAGAAAATTCCTGGAG GCAGTCCTGTCCTTGGATACCTGGCTGCTGGCATCTTGATTGGCCCATATGGTCTCTCTATCATCCGTCATGTGCATGGTACAAAGGCGATTGCTGAATT TGGAGTTGTTTTCTTGCTATTCAATATTGGCCTTGAGCTCTCTGTTGAAAGGCTCAGTTCCATGAAGAAATATGTTTTTGGATTAGGCTCCGCTCAGGTC TTGGTGACAGCAGTGGTTGTTGGTTTGGTCGCACATTTTGTTTCTGGGCTGCCTGGTCCTGCTTCAATTGTCATTGGAAATGGCCTGGCACTATCTTCCA CTGCTGTTGTTCTACAGGTGTTGCAAGAGCGAGGTGAGAGCACATCACGTCATGGACGTGCTACTTTCTCTGTCCTACTATTCCAGGATTTGGCTGTTGT GGTGTTGCTAATACTCATACCCCTTATTTCACCAAATTCATCCAAAGGAGGGGTTGGTTTTCAAGCAATTGCTGAAGCTCTTGGGATGGCAGCTGTCAAG GCAGCAGTTGCCATCACTGCGATAATTGCTGGTGGAAGATTGCTGCTTCGACCAATTTATAAACAAATTGCAGAAAATCAAAATGCAGAGATATTCTCAG CCAACACACTTCTTGTTATTCTGGGGACCAGTCTCCTTACAGCCAGGGCTGGACTTTCCATGGCGTTAGGGGCTTTTCTGGCTGGTTTGCTTCTTGCGGA AACTGAATTTTCCTTGCAGGTTGAATCAGATATCGCCCCATATCGCGGGCTTCTATTGGGTCTTTTTTTCATGACGGTTGGAATGTCTATTGACCCAAAA CTTCTGGTTTCAAATTTTCCTGTCATTATGGGATCATTAGGACTTTTAATTGGTGGCAAGACCGTGTTGGTTGCTTTAGTTGGCAGGGTTTTTGGTGTTT CAATTATATCTGCAATAAGGGTTGGTCTTCTTCTTGCTCCGGGTGGAGAATTTGCATTTGTTGCATTTGGTGAAGCTGTTAATCAGGGTATAATGTCTCC TCAGTTATCATCTTTATTGTTTCTTGTGGTGGGGATCTCAATGGCCATGACACCATGGCTAGCTGCTGGCGGCCAGTTAATAGCCTCTCGCTTTGAGCAG CATGATGTTCGTAGTTTGTTACCAGTTGAGAGCGAGACAGATGATTTGCAGGATCATATTATTATCTGTGGATTTGGACGTGTTGGCCAGATTATAGCGC AGCTTCTCTCAGAACGATTAATTCCATTTGTTGCTCTTGATGTGAGGAGTGATAGAGTGGCAGCAGGCCGTGCCCTGGATCTTCCTGTGTATTTTGGAGA TGCTGGTAGTCGAGAGGTCCTCCATAAAATCGGTGCTGAAAGAGCATGTGCTGCAGCAATAACTCTAGATACACCTGGTGCAAATTATAGAACTGTCTGG GCTCTGAGCAAGTACTTTCCCAATGTGAAGACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAGAAGGCTGGTGCTTCAGCTGTTGTCC CCGAAACGTTGGAACCAAGTCTACAGTTGGCTGCTGCTGTTCTTGCACAGGCTAAACTGCCCATGTCAGAGATTGCAGCCACCATCAACGAATTTAGAAC CCGCCATTTGTCTGAGCTTACTGAGCTATGTGAAAGTAGTGGAAGTTCTCTTGGGTATGGATTTTCTCGTGTCATGACTAAACCCAAAACGCAGTCCTTG GATTCATCAGATGAAAACCAATTCAGTGAAGGAACATTAGCAATATGA
AA sequence Show only first row Show all	>Potri.014G080800.2 pacid=42762961 polypeptide=Potri.014G080800.2.p locus=Potri.014G080800 ID=Potri.014G080800.2.v4.1 annot-version=v4.1 MEFACNFQQTNAFYRTQGTDYKVSNGLHSRFRYRSYGYNDVDLKIVSRERPSKKLKKSVLAYGGGRGIHSHLRVGGYSSEPLFCNFIDGFKGLRSVKLGC QGNDSLAYIDGNGRNVENGEGNDESLRAGSNSGFGEGDGRGEKEVETGVVVEALNLDELKELLHKATRDLEVAQLNSTMFEEKAQSISETAIALQDEAES AWNDVNSTLDLIQDIVNEEGVAKEAAQKATMALSLAEARLKVAVESIKAMKERVDSLEGSRESDAENDGKEDYETILAAQNDIRDCQANLANCEAELRRL QSKKEALQNEVSVLNEKAEKAQMNALKAEEDVANIMLLAEQAVAFELEATQRVNDAEIALKKAEKSLASSRVDIQETARGYVSGDEAVIEEQKMGGGSAS DVEKERDMTVNGDVLVGEPSIDRLSDKTSQSSEELYLSDDSSDHENGKLSLDSNKDTEAEAEKSKSGDQTKKQEIQKDLTWESSSSPLSAPKALLMKSSR FFSASFFSFSGDETEVTAASVFQGLMESARKQLPQLVLGLLLFGTGFAFYSNRVERSPQMLQQSDIVTTSIEEVSSNAKPLIQHIQKLPKRFKKLIAMLP HQEMNEEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGMAAVK AAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPK LLVSNFPVIMGSLGLLIGGKTVLVALVGRVFGVSIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGISMAMTPWLAAGGQLIASRFEQ HDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAAGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVW ALSKYFPNVKTFVRAHDVDHGLNLEKAGASAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRTRHLSELTELCESSGSSLGYGFSRVMTKPKTQSL DSSDENQFSEGTLAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	0	1
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	6.08	0.8055
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.001G008800 [exp]	10.81	0.7944
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	12.32	0.7798
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	13.26	0.7529
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	15.00	0.7778
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	18.11	0.7973	TTN8.2
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	18.13	0.7606
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	21.21	0.7442
AT3G14830			unknown protein		Potri.011G106600 [exp]	22.36	0.7548
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G062800 [exp]	23.95	0.7482

Compare expression of checked genes

Potri.014G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.