Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38040 700 / 0 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110500 [exp] 684 / 0 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.006G095800 [exp] 670 / 0 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.009G100800 [exp] 43 / 0.0008 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021126 [exp] 535 / 0 AT2G38040 765 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Lus10017184 [exp] 531 / 4e-180 AT2G38040 755 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Lus10014068 [exp] 47 / 6e-05 AT4G34030 927 / 0.0 3-methylcrotonyl-CoA carboxylase (.1) Lus10019848 [exp] 46 / 0.0001 AT4G34030 921 / 0.0 3-methylcrotonyl-CoA carboxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF01039 [poplar] [flax] Carboxyl_trans Carboxyl transferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G081000.1 pacid=42763321 polypeptide=Potri.014G081000.1.p locus=Potri.014G081000 ID=Potri.014G081000.1.v4.1 annot-version=v4.1 ATGGCCACCACCTTATCTATATCAGCTGGAAATTGTGGCAAAGAGAGGCCATGTATTGAACTTGGTTCAAATGCTTCCATTGTCAAGGATGTTTTTGGTG AAAATTTGATCAGAAGTTGTAAATTTAGAAGGGGAAATGGATATAGGTGTAAAGGGGTTCGTGTCATTGCACGAACTAAGAAATGGAAGAAGCATGAATA CCCCTGGCCTGATAATATTGATCCAAATATTACTAGTGGGCACTTGAGTTACTTGTCTCATTTCAAGCCTTTAACTGAGAAACCAAAACCAGTGACACTT CCTTTCGAGAAGCCATTGATTGATCTTGAAAAGAGAATTATTGAGGTACGTAGAATGGCTGATGAAACTGGCCTGGATTTCAGTGATCAAATTTTGGCTT TAGAAAACAAGTATCAGCAGGCACTGAAAGATTTATACACGCACTTGACACCCATTCAGCGCCTGTCTATTGCTAGGCATCCCAACAGACCAACAGTTCT TGATAATATTTTCAATATCACTGAGAAGTGGGTGGAACTCCATGGAGATCGTGCAGGTTATGATGATCCAGCTATTGTGACTGGTATTGGAACCATTGAT GGTAAAAGCTACATGTTCATAGGCCATCAAAAAGGTAGGAACACAAAGGAGAATATCGCTCGCAACTTTGCAATGCCAACTCCTCATGGCTATCGGAAGG CCTTGCGCATGATGAAATATGCTGATCACCATGGTTTCCCCATAATCACTTTTGTTGACACTCCTGGGGCCTTTGCTGATCTCAAATCTGAGGAACTTGG TCAGGGTGAAGCAATAGCCCATAATCTGAGGACTATGTTTGGCCTGAAAGTGCCTATTGTATCAATTGTAACCGGTGAAGGTGGTTCTGGTGGAGCTCTT GCAATTGCTTGTTGTAATAAAATGCTTATGCTTGAGAACTCTGCTTTCTATGTTGCAAGTCCTGAAGCATGTGCTGCCATATTGTGGAAGTCTTCTCAAG CAGCTCCTAAGGCAGCTGAGAAACTGAAGATCACAGCCCAAGAACATTACAGGCTGAAAATTGCTGATGGCATAATTCCTGAGCCTCTTGGGGGTGCCCA TGTGGATCCTGCATGGACTTCCCAACAAATTAAGCTTGCAATCATCCAAACCATGGAGGAACTAACAAAAATGGATAAGGAAGAGTTGCTCCACCACCGG AAGCTCAAGTATCGGTATATTGGAGGCTTCCAAGAAGGCGTGCCAGTGGAACCAGAGAGAAAGCGCAACATGAAACTATCCGAGGTTAACAAGCCAATGA CAGATGATATCGAGCTGGAGCTTGAAAACTTGAAGAAGAAGATTCTCGAATCCAATAGTGCTACGGATCCAATTTCAAGCCAAGCAATTGAGAAGCTCAA GCAAGACCTGGACCAGGAGATTACCAATGCTTTTATTTCAATGGGCTTACAAGAGAAGCTCGAATCAGTCAAATTGGAGTTATCTAAAGCCTCAGACGAC CAACCTAATAAGCCCCCCAATCGCCACTTGAAGGAGAAGGTCGACCAAATCATGCAAGAATTCCAGCATAATTTGGCACGACCGGGAGCCTATCTTGGAT TGAAGCAGAAGCTTGAAAAGTTAAACATGGTTGGCAAGCTCATTGAGCTAAAAGAGAAAAGTGAGAAACTGAAAGCAGAGATAAACCAAAAGGTCCCAGA TGAGTTAAAAGCAAAGATGAAACTTTTGAAGGATGCTCAAGAAAAGTTGTCAAAAGGCGAAGCAATAGACAAAGATTTGGTGGAACAAACAGAGAGGGCT AAGCAAGAGCTGATTGAGTTTCTAAAGTCAGTTGGGTTGGAGATTGTAGGGGTAACTAAAAGAAACGTAGGCCCTCCACCTCCTTCATTGCAAGAGAAAA TAACAAAGGTGAACAAAGAGATAGCTGAAGAAATTGAAAGAGTGATAAATGTTGCAGGTCTTGGTGACAAAGTTGAGGAGCTGAAATCAGAAATAGCAAG AGGGTCGAGTTCCGAAAAAGTAGAAAAAATGCAAGCAGAGATCAGGAAGGAAATCCTTGCTGCTTTGGATGCCATGACATGCAAAGAAAAGTTAGAGAAC CTGAGAGTGGAGTTGGCATCCACCTCAGGAAAAGCTGAAGACAAGGTTGTGGCCGAAAACGGCAGATTGTGA
AA sequence Show only first row Show all	>Potri.014G081000.1 pacid=42763321 polypeptide=Potri.014G081000.1.p locus=Potri.014G081000 ID=Potri.014G081000.1.v4.1 annot-version=v4.1 MATTLSISAGNCGKERPCIELGSNASIVKDVFGENLIRSCKFRRGNGYRCKGVRVIARTKKWKKHEYPWPDNIDPNITSGHLSYLSHFKPLTEKPKPVTL PFEKPLIDLEKRIIEVRRMADETGLDFSDQILALENKYQQALKDLYTHLTPIQRLSIARHPNRPTVLDNIFNITEKWVELHGDRAGYDDPAIVTGIGTID GKSYMFIGHQKGRNTKENIARNFAMPTPHGYRKALRMMKYADHHGFPIITFVDTPGAFADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVTGEGGSGGAL AIACCNKMLMLENSAFYVASPEACAAILWKSSQAAPKAAEKLKITAQEHYRLKIADGIIPEPLGGAHVDPAWTSQQIKLAIIQTMEELTKMDKEELLHHR KLKYRYIGGFQEGVPVEPERKRNMKLSEVNKPMTDDIELELENLKKKILESNSATDPISSQAIEKLKQDLDQEITNAFISMGLQEKLESVKLELSKASDD QPNKPPNRHLKEKVDQIMQEFQHNLARPGAYLGLKQKLEKLNMVGKLIELKEKSEKLKAEINQKVPDELKAKMKLLKDAQEKLSKGEAIDKDLVEQTERA KQELIEFLKSVGLEIVGVTKRNVGPPPPSLQEKITKVNKEIAEEIERVINVAGLGDKVEELKSEIARGSSSEKVEKMQAEIRKEILAALDAMTCKEKLEN LRVELASTSGKAEDKVVAENGRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.014G081000 [exp]	0	1
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.005G156600 [exp]	11.87	0.7903
AT4G31040			CemA-like proton extrusion pro...		Potri.006G080100 [exp]	18.54	0.7977
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.009G139400 [exp]	20.97	0.7651
AT2G42760			unknown protein		Potri.006G129800 [exp]	24.65	0.7313
AT2G03710	MADS	AGL3, SEP4	SEPALLATA 4, AGAMOUS-like 3, K...		Potri.001G058200 [exp]	25.03	0.7345
AT4G32030			unknown protein		Potri.006G259700 [exp]	25.45	0.7275
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	30.29	0.7548	Pt-DET1.1
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	34.19	0.7546
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Potri.011G082800 [exp]	40.69	0.7398
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	47.32	0.7438

Compare expression of checked genes

Potri.014G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.