Plant FIBer expression Database

Potri.014G081400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01760 475 / 6e-167 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017815
[exp]
453 / 4e-158 AT1G01760 408 / 2e-140 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF02137 A_deamin Adenosine-deaminase (editase) domain
Representative CDS sequence
>Potri.014G081400.9 pacid=42763409 polypeptide=Potri.014G081400.9.p locus=Potri.014G081400 ID=Potri.014G081400.9.v4.1 annot-version=v4.1
ATGAACACTGACATTCCAAATCCAAGTTATTCAACAGAGAAACAATGGGGAGAGAAAGTATCAGAGAAAGTGATGTCAGCATACAAATCTCTCCCTAAAA
AAGGAAAGCCTCAAGGTTGCGAAGTCACCGTCTTAGCTTCATTTCTCCTTTCCTCTCCTTCTCAAGAATTGGAAGTTGTTGCGTTGGGGACCGGTACGAA
ATGCGTTGGACGCTCACTTCTGAGCAACCGCGGTGATATTCTCAATGATTCACATGCTGAGATTATTGCTAGAAGAGCTTTAATTAGGTTTTTCTATGCG
GAGATTCTACACATTATTCGCGGTTCATCTGAGGATGGATGTAATAATGGAAGCAAAGAAGTGAAAATTAATGATGGCAGTAACTGGATTTTTGAACTGG
AACAGCGTGGCTGTAGTGAAGAGAAGTTTAAGTTGAGAGAGGGTTGGCAATTGCATCTGTACATTTCACAATTGCCATGCGGGGATGCTTCTGTAAGTTC
ACTGTTGTCTCCTGCGAGAAATGTTTTCACAAGAGAAGGGGATCTGCCACCATCCCTATGTGAGAATGGTTCGACAAGTGACCTTTTGGAGGTTACAAAA
GAGAATAATGGTAGACTTTCCACTAATGGTTCACAAATCAGTGGCATGGTTCAGAGGAAGCCTGGTCGTGGTGATACAACATTGTCAGTTAGCTGCTCTG
ACAAAATAGCTCGGTGGAATGTTGTTGGAGTTCAAGGAGCTTTGCTTTCCTACTTTCTTCAACCCGTTTACCTTTCTTCGGTAACCGTTGGGCAATCCTC
TAATAGTCCCAAAAACTTTTGTCTAGAAGATCACTTGAAAAGAGCCTTGCATGATCGAATCCTGCCATTGTCGAATGAACTAGTTTCTCCTTTCCATCTA
GACAAGCCACTTTTTTATGCAGCTCCTGAACCACCCATGGAATTTAAGCATGCTGACACTGCTCTGGTAACTTTGACATGCGGGTATTCCATATGTTGGA
GCAAGTCTGGCATGCATGAAGTCGTCCTTGGGACCACTGGAAGAAAGCAAGGCACTTCTGCTAAGGGGGCACTTTCTCCAGCAACCATGTCCTCTCTATG
CAAAAAGCGGTTATTGGAGGTTTTCTTGACATTAAAGCAGGAGTTCCAGAGCAAATGCCCAGCCAAAGATATTTCTTATCGAGAACTCAAGAACAATGCT
CAAGCGTACAGTTCAACTTCAAAATCTTTTAAAGAAAGTGCGGCTTTTAACAATTGGCCATTGAAACCCTTGGACTCTGAGGCCTTCTCCATTTTGAGGG
AGTGA
AA sequence
>Potri.014G081400.9 pacid=42763409 polypeptide=Potri.014G081400.9.p locus=Potri.014G081400 ID=Potri.014G081400.9.v4.1 annot-version=v4.1
MNTDIPNPSYSTEKQWGEKVSEKVMSAYKSLPKKGKPQGCEVTVLASFLLSSPSQELEVVALGTGTKCVGRSLLSNRGDILNDSHAEIIARRALIRFFYA
EILHIIRGSSEDGCNNGSKEVKINDGSNWIFELEQRGCSEEKFKLREGWQLHLYISQLPCGDASVSSLLSPARNVFTREGDLPPSLCENGSTSDLLEVTK
ENNGRLSTNGSQISGMVQRKPGRGDTTLSVSCSDKIARWNVVGVQGALLSYFLQPVYLSSVTVGQSSNSPKNFCLEDHLKRALHDRILPLSNELVSPFHL
DKPLFYAAPEPPMEFKHADTALVTLTCGYSICWSKSGMHEVVLGTTGRKQGTSAKGALSPATMSSLCKKRLLEVFLTLKQEFQSKCPAKDISYRELKNNA
QAYSSTSKSFKESAAFNNWPLKPLDSEAFSILRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G01760 adenosine deaminases;RNA bindi... Potri.014G081400
[exp]
0 1
AT5G10320 unknown protein Potri.005G073600
[exp]
1.73 0.7416
AT1G10095 Protein prenylyltransferase su... Potri.013G047100
[exp]
5.47 0.7034
Potri.001G149001
[exp]
5.47 0.6854
AT1G69380 RRG RETARDED ROOT GROWTH, Protein ... Potri.010G162500
[exp]
8.66 0.7045
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.009G078700
[exp]
9.94 0.7151
AT3G29090 PME31, ATPME31 A. THALIANA PECTIN METHYLESTER... Potri.017G087300
[exp]
12.00 0.6570
AT2G18465 Chaperone DnaJ-domain superfam... Potri.001G308900
[exp]
14.14 0.6470
AT1G02880 TPK1 thiamin pyrophosphokinase1 (.1... Potri.002G205800
[exp]
14.69 0.6795
AT5G64010 unknown protein Potri.005G064800
[exp]
16.70 0.6633
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.014G077200
[exp]
17.20 0.6995

Potri.014G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.