Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45830 613 / 0 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 611 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT5G23850 580 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 572 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 514 / 2e-178 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 501 / 4e-174 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT2G45840 484 / 1e-167 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61290 478 / 5e-166 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 400 / 6e-135 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144400 [exp] 637 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 635 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157900 [exp] 559 / 0 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 542 / 0 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 366 / 7e-122 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 94 / 5e-23 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037864 [exp] 575 / 0 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10039228 [exp] 544 / 0 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 491 / 5e-170 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 454 / 3e-157 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037863 [exp] 442 / 2e-151 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 419 / 5e-143 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 382 / 8e-128 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 376 / 1e-125 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 367 / 1e-119 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 329 / 2e-109 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF05686 [poplar] [flax] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Potri.014G081600.1 pacid=42762590 polypeptide=Potri.014G081600.1.p locus=Potri.014G081600 ID=Potri.014G081600.1.v4.1 annot-version=v4.1 ATGAGGGAGAAAGAAAAATATGCAAATGATATCTGGCACTCAGGGTTTGAAAGATACTTGACAAAGCAACCGTGGAGAACAGTGAAAAAGAGAGATGCTG CCACTGTTTTGGTAGCCTTCTTTCTCATCCTCTTCCTTGGCGCCTTAGTATTTGTGGGTTGGTTTGATGCTTCGGTATTTCGAGGTATTTCTCGAAAACC AACCCTGACACCCACAGGAATGCCTTCAGAGTTCCCACTCCGATGCGCCACAGGAAACCTGAAGCAAACCTGTCCAGAAAACTATCCTACTAAACACAAC CCCACCACAAATCCTGACCGCCCGTCAAACCTTACTTCTACATGCCCATCATACTTCCAATGGATCCATGATGATCTACGACACTGGAAAGAGACAGGAA TCACGCAGGACATGATCGAACGGGCTCGAAAAACAGCACATTTTAGGCTTGTGATTGTCAACGGGAAGGCCTATGTAGAGAAGTACAGGCAATCAATACA GACGAGAGATATGTTCACCTTATGGGGTATTTTACAGCTTCTAAGATTGTATCCTGGTAGATTGCCTGATTTGGAGCTCATGTTTGACTGTGACGATCGG CCGGTCATTCCATCGAAGCATTTTAGGGGCCCAAATGCTGCCCCACCGCCATTGTTTCGATACTGTTCAGATTGGCAGAGCTTAGATATTGTGTTCCCGG ATTGGTCATTTTGGGGCTGGGCTGAGACCAATATACGGCCATGGAAAAACTTGTTGAAGGAAATCAAAGAAGGTAACAGCAGAACTAAATGGAAGGACAG GACACCCTATGCTTACTGGAGAGGTAACCCATGGGTGTCTCCAATAAGGCAGGACCTCCTCAAGTGCAATGTCTCTGAACAGAATGACTGGAACACTCGC CTGTATCTTCAGGACTGGGTAAAACAATCTAAAGAAGGGTACAGAGAATCAAATCTACAAGATCAATGCACCCATAGATATAAGATCTACATAGAAGGAT GGGCCTGGTCTGTAAGCGAGAAATATATCTTAGCTTGTGATTCAGTGACCTTGTACGTGAGGCCTCGTTACCATGATTTCTTTATAAGAGGCATGGTGCC ATTGCAGCACTACTGGCCTATTAGGGACAACAGCAAGTGCACTTCTCTCAAGTTCGCCGTGGAATGGGGCAACAATCACACCAAAGAGGCACAAGCCATA GGAGAGGCTGCTAGCAACTTCATTCATGAGGATATGAAGATAGATTATGTGTATGATTACATATTTCATCTACTAAACGAGTATGCAAAGCTCTTGAAAT TCAAGCCAAAAATACCCCCAGGAGCAGATGAGCTATGTCCAGAAACAATGGCGTGCCCCACAAATGGTATACATAGAAAGTTCATGGAGGAATCCATGGT GCTGTCTCCGAGTGATGCAATCCCGTGCACCTTGCCTCCCCATGATCCTTCGGTTCTTGGAAGTTTGCGGGATAGAAAAGACAAATCAACTAAGCAAGTA GAGTCGTGGGAAAATGAATATTGGGAAAAATTAAGTAAGAAGCAATAG
AA sequence Show only first row Show all	>Potri.014G081600.1 pacid=42762590 polypeptide=Potri.014G081600.1.p locus=Potri.014G081600 ID=Potri.014G081600.1.v4.1 annot-version=v4.1 MREKEKYANDIWHSGFERYLTKQPWRTVKKRDAATVLVAFFLILFLGALVFVGWFDASVFRGISRKPTLTPTGMPSEFPLRCATGNLKQTCPENYPTKHN PTTNPDRPSNLTSTCPSYFQWIHDDLRHWKETGITQDMIERARKTAHFRLVIVNGKAYVEKYRQSIQTRDMFTLWGILQLLRLYPGRLPDLELMFDCDDR PVIPSKHFRGPNAAPPPLFRYCSDWQSLDIVFPDWSFWGWAETNIRPWKNLLKEIKEGNSRTKWKDRTPYAYWRGNPWVSPIRQDLLKCNVSEQNDWNTR LYLQDWVKQSKEGYRESNLQDQCTHRYKIYIEGWAWSVSEKYILACDSVTLYVRPRYHDFFIRGMVPLQHYWPIRDNSKCTSLKFAVEWGNNHTKEAQAI GEAASNFIHEDMKIDYVYDYIFHLLNEYAKLLKFKPKIPPGADELCPETMACPTNGIHRKFMEESMVLSPSDAIPCTLPPHDPSVLGSLRDRKDKSTKQV ESWENEYWEKLSKKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45830		DTA2	downstream target of AGL15 2 (...		Potri.014G081600 [exp]	0	1
AT5G23230		NIC2	nicotinamidase 2 (.1)		Potri.003G003300 [exp]	6.00	0.8915
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.007G122800 [exp]	11.74	0.8502
AT2G43540			unknown protein		Potri.007G134400 [exp]	12.32	0.8727
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105400 [exp]	12.96	0.8699
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	13.03	0.8919
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	15.42	0.8623
AT5G57340			unknown protein		Potri.006G165500 [exp]	19.44	0.8415
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G002100 [exp]	21.90	0.8560
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	28.24	0.8753
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	29.66	0.8655

Compare expression of checked genes

Potri.014G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.